Protein

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Genbank accession
YP_010676966.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAVSIIGPKFYAWDRCGKPLAFGKLYTYQARTNTPKPTYQSEDQQVENTNPVILNGEGYANVYLDGSYKMVLKDKDENEIWSADPVTSAQAAEWVNCQSAFYVSPSSFVVSGNLVEEFEIGRKVRVDNQSSEFSYSTINSAVFASGETTVSLSDAVVLTSISEVCISVIGPDSTPSNITKTFPTLVGDPKSAVNDNSIRAGDIIIVSERKDGEGGFSSWLATPTLEVSPNSYNIVQSSVNPDLSFVLKTNDQGVLNARAAGFIADGSTDNRDALEAIKNALSGIVELFFDFGTYSFSQIDLLDTPLVLSGLNRRATLKGIAASPYSDFIRIGSSSQIFTNSYLKGLKLEGVNREQTGVVIKNLTGVGFDVEMTNFSALIKNLGGLSYQFKNFKGSDYGTGFQSRKSEGSDSVTVYNNHIQFVGQTQITGGEGKAIDHDEGYGLYFEKLQLDFCGTSSVLTTGGIFVGPNVGQEVSLSSYPGVVIDNAVLEGVKGRPLYVQSGSVVIKAFSGFANEDKYVFETTDSVCCIDMVDGSGNGQIEIVASNNKAVFINTTMTNGITGIGGGDISPFAVLINSGNGSQAQNGFLNLALQSLYVGGNPTNKLSDANYTIDSTLGGVRRADDPASGPDSVGYQYMRTNNYASQDGWRHRSRSHSWHTHTNAFQMGVNENGDVAATSFTPFTGVHYFVSDEKIDIGMAVDLIDFSQVDVLITVEAVINDEGEIVEPEFVAKLPFKANGIVSISSENSKVCAGIVHRCEKIKSGYLVYVAAVGDNYSGELKGFLVEGSPVAGDILCTGSNGKLKVAPKDIEREVVTFKAMSGAKNGSCYGYF
Physico‐chemical
properties
protein length:832 AA
molecular weight: 89145,32360 Da
isoelectric point:4,74864
aromaticity:0,09615
hydropathy:-0,12452

Domains

Domains [InterPro]
DC_2164
STR
1–780
DC_2164
IPR011050
STR
253–567
IPR011050
YP_010676966.1
1 832
Architecture
STR
STR 1-780 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010676966.1
1 832
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,9159
Central domain 272 569 299 0,9684
C-terminal 570 832 262 0,9494
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-569
C-terminal
570-832

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage X14
[NCBI] 		2576871 Uroviricota > Caudoviricetes > Bocovirus >
Host Shewanella inventionis
[NCBI] 		1738770 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010676966.1 [NCBI]
Genbank nucleotide accession
NC_071016.1 [NCBI]
CDS location
range 8225 -> 10723
strand +
CDS
ATGGCAGTATCAATAATTGGCCCTAAGTTTTACGCTTGGGACAGATGCGGAAAGCCGCTTGCGTTTGGTAAGCTTTATACATACCAGGCTAGAACTAACACACCAAAACCAACATACCAATCAGAAGATCAACAGGTTGAAAATACTAACCCTGTAATCCTGAACGGGGAGGGCTATGCAAATGTTTATTTGGATGGTTCTTACAAAATGGTCCTTAAAGATAAGGATGAAAATGAAATATGGTCAGCCGATCCAGTTACTTCAGCTCAAGCTGCAGAGTGGGTAAATTGCCAGTCGGCATTTTATGTTAGCCCATCCTCTTTTGTTGTCTCTGGAAATTTGGTTGAGGAATTTGAGATTGGAAGAAAGGTTAGAGTAGACAATCAGTCTTCTGAATTCTCTTACTCAACGATAAATTCTGCGGTTTTTGCTTCTGGTGAGACGACAGTTTCACTGTCTGATGCGGTTGTTCTGACAAGTATTTCAGAGGTTTGCATTTCGGTAATCGGCCCTGACTCAACCCCTAGCAACATAACAAAAACTTTTCCAACCTTGGTTGGTGATCCAAAGTCTGCTGTAAACGATAACTCTATACGTGCAGGGGATATAATTATTGTATCCGAGAGGAAGGATGGCGAAGGAGGTTTCTCAAGCTGGCTTGCAACGCCAACTTTAGAAGTTAGCCCAAATAGTTACAATATAGTCCAGTCCTCAGTAAACCCCGATTTGAGTTTTGTTTTAAAGACAAACGATCAAGGGGTTTTGAACGCAAGGGCGGCGGGTTTTATTGCAGACGGAAGCACAGACAACAGGGATGCTCTGGAAGCGATAAAAAATGCGTTAAGCGGCATCGTTGAATTGTTTTTTGATTTTGGTACTTATTCATTTAGCCAGATAGACTTGCTCGACACACCTCTTGTGCTTAGCGGCCTAAACAGAAGAGCGACCTTAAAAGGGATTGCTGCAAGCCCATATTCTGACTTTATTAGAATTGGCTCGTCTTCTCAGATTTTTACTAACTCATATTTAAAAGGGTTAAAGCTTGAGGGTGTAAATAGAGAGCAGACAGGTGTGGTTATTAAAAACCTTACTGGCGTGGGGTTTGATGTTGAAATGACAAACTTCTCAGCTTTGATAAAAAACCTTGGCGGCCTTTCATATCAATTCAAAAACTTTAAAGGTTCTGATTATGGGACTGGGTTTCAAAGTAGAAAGTCAGAAGGAAGCGACTCTGTTACAGTTTATAATAATCATATTCAGTTTGTCGGGCAAACTCAGATAACAGGCGGTGAGGGCAAAGCGATTGATCACGATGAAGGTTACGGTCTTTACTTTGAAAAACTTCAGCTTGACTTTTGTGGTACCTCTTCTGTTCTTACAACTGGTGGTATTTTTGTAGGGCCGAATGTCGGCCAAGAGGTTTCTCTTTCTTCATATCCGGGAGTTGTTATAGATAATGCCGTTCTTGAGGGTGTCAAGGGTAGGCCATTATATGTTCAGTCTGGCTCTGTGGTTATAAAGGCATTTAGTGGTTTTGCTAATGAAGATAAATATGTCTTTGAAACCACTGATTCGGTCTGTTGTATTGATATGGTTGATGGTTCAGGTAATGGGCAGATTGAGATAGTTGCCTCAAACAACAAAGCTGTATTTATTAACACAACAATGACTAACGGGATAACTGGTATCGGTGGTGGTGACATTAGTCCATTTGCTGTTCTGATAAATTCTGGTAACGGATCGCAAGCACAAAACGGTTTTTTAAATCTTGCTTTGCAATCTTTATATGTAGGTGGAAACCCAACCAATAAACTGAGTGATGCTAATTACACCATAGATAGTACGCTTGGCGGTGTTCGTCGCGCAGACGACCCGGCAAGCGGCCCTGACTCAGTTGGATATCAATATATGAGAACCAATAATTACGCATCTCAAGACGGTTGGAGGCATCGTTCCAGATCTCACTCTTGGCACACTCACACTAACGCATTTCAAATGGGGGTTAACGAAAATGGTGATGTTGCGGCAACAAGTTTTACTCCATTTACTGGTGTTCATTATTTTGTTTCTGATGAAAAAATAGATATTGGAATGGCTGTTGATTTAATTGATTTTTCTCAAGTGGATGTGTTAATCACAGTTGAAGCAGTTATTAATGATGAGGGTGAGATTGTTGAGCCTGAGTTTGTAGCTAAGCTACCGTTTAAAGCTAATGGTATTGTTTCCATCTCTTCTGAAAACAGTAAGGTTTGTGCTGGAATCGTTCACAGGTGCGAAAAAATCAAAAGCGGCTATCTTGTTTATGTCGCCGCTGTTGGTGACAACTATTCGGGAGAACTGAAGGGCTTTTTGGTGGAAGGTAGCCCTGTTGCTGGTGACATTCTTTGCACTGGTTCTAATGGAAAGTTAAAGGTTGCCCCGAAAGATATAGAAAGGGAGGTTGTCACTTTCAAGGCGATGTCAGGCGCTAAAAATGGATCTTGCTATGGTTATTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8734aeb6b87de62193bfb2d709283e570b24d2578ebd732e2194cae7053941b5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3139
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence analysis of a novel Podoviridae phage X14 Liu,Y. 2019-06-18 — GenBank