Protein

View in Explore
Genbank accession
YP_010105003.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MAQIDWRFMQPLDQSNQIAAMAAGNQQINAGLAAMGGAVTGYADALKQRNTDEILNALYQAQNTDQLPDAMAAVANLQKQYGRGFDQAAVRNAVDARGSTLMQRDLQGINLQQAQAAQAAIPQLNQMALAQAKARGVDVSGFENAANLGIDTSSQINSFANQMVNDTRDTRDFNYRSEKDARDFNYRKERDLTLDEQWKAANDRANMDSAYRYAEGFTTPAQSGYSVNPDGTISTYSTPGVTRGNAFAALMPSLFQQESGNRHRDANGNLITSPKGASGIAQIMPNTAAKPGYGMKPINLQTSTPEQQMQWATEYIGRIADHHKFTVPQALAAYNAGPGAVEDAIAKAKKSGGDFLQYLPKETQNYVPSILNRAGQGNAQQAVNAVGGTGLSQASMAKITGGYNDAIAKLNADYNAQGAKDQIKGSVATTGKNVDTWVASKKDKGLIFSNNNTFFTKATDLAKMAKADPAFNKLPENAQMNVLEGAYAKMNDVNAFQYVPDGDLKKFISRESQNYQKDRVNQFNQQKEAAFEQAYQSAVKEFRAVGQQPPSREGFRQLVDPQAPAPKKQQSNAQKATAAVTPRATRAVQAPSYITQGARINSRNEALSQARERSTNVANAPTRKELDALKAEALRKANTKREEEAAKAAFKKLQEANKNKPLSPEMQKLLKRYGG
Physico‐chemical
properties
protein length:675 AA
molecular weight: 73341,88750 Da
isoelectric point:9,44837
aromaticity:0,07111
hydropathy:-0,70089

Domains

Domains [InterPro]
DC_0193
STR
1–225
DC_0193 G3DSA:1.10.530.10 DC_2196
PTHR37423
Unmapped
36–414
PTHR37423 Coil
cd00254
ENZ
248–375
cd00254
IPR023346
STR
249–374
IPR023346
G3DSA:1.10.530.10
RBD
250–395
G3DSA:1.10.530.10
IPR008258
ENZ
254–351
IPR008258
YP_010105003.1
1 675
Architecture
STR
STR
RBD
STR 1-225 | STR 244-374 | RBD 375-675
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage VB_ApiP_XC38
[NCBI] 		2655002 Uroviricota > Caudoviricetes > Schitoviridae > Exceevirus Xc38 >
Host Acinetobacter pittii
[NCBI] 		48296 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010105003.1 [NCBI]
Genbank nucleotide accession
NC_055823 [NCBI]
CDS location
range 14308 -> 16335
strand +
CDS
ATGGCACAAATTGATTGGCGGTTCATGCAACCACTAGATCAGTCTAACCAAATCGCTGCTATGGCGGCAGGGAACCAGCAAATCAATGCTGGCCTTGCTGCTATGGGTGGAGCAGTTACAGGTTATGCTGATGCACTTAAACAACGAAATACAGATGAGATACTTAATGCGTTATATCAAGCACAAAACACTGATCAGCTTCCTGATGCTATGGCTGCTGTTGCTAATCTACAAAAACAGTACGGCAGGGGGTTTGACCAAGCTGCTGTAAGAAATGCCGTTGATGCTCGTGGTTCTACGTTAATGCAACGTGACCTACAAGGTATCAACTTACAGCAGGCCCAAGCAGCACAAGCTGCTATTCCTCAATTAAACCAGATGGCTCTAGCTCAGGCTAAAGCTCGTGGTGTGGATGTATCAGGCTTTGAAAACGCAGCGAATCTAGGTATTGATACATCAAGCCAAATTAATAGTTTTGCTAATCAAATGGTGAATGACACTCGTGATACGAGAGACTTTAACTACCGTAGTGAGAAAGATGCTCGTGATTTTAATTACCGTAAAGAACGAGATTTAACATTAGATGAACAATGGAAAGCAGCAAATGATAGAGCAAACATGGATTCAGCTTACCGTTACGCAGAGGGTTTTACTACACCTGCTCAAAGTGGGTATAGTGTTAACCCTGATGGAACTATCAGTACATATTCCACTCCTGGGGTAACAAGAGGTAATGCATTTGCTGCTTTAATGCCTTCTTTGTTCCAACAAGAGTCTGGTAATAGACATCGTGATGCCAATGGTAATTTAATTACTTCTCCTAAAGGAGCATCAGGTATTGCACAGATTATGCCTAATACTGCAGCTAAACCCGGCTATGGTATGAAGCCTATTAACTTACAGACTTCTACTCCAGAACAGCAGATGCAGTGGGCTACTGAGTATATTGGACGTATTGCAGATCACCATAAGTTTACTGTACCTCAAGCTCTGGCTGCTTATAACGCAGGGCCTGGAGCAGTAGAAGATGCTATTGCTAAAGCCAAGAAATCAGGTGGAGACTTCTTACAGTACTTACCTAAAGAAACCCAGAACTATGTACCTTCTATCCTTAACCGTGCAGGGCAAGGTAACGCACAGCAAGCAGTTAATGCTGTAGGTGGTACAGGTCTATCTCAAGCTAGTATGGCTAAGATTACTGGTGGATATAATGATGCAATAGCTAAGCTCAATGCTGACTATAATGCTCAAGGTGCTAAAGATCAGATCAAAGGCTCTGTAGCTACTACAGGTAAGAACGTAGATACTTGGGTTGCTAGTAAGAAGGATAAAGGACTAATCTTCTCTAACAACAATACATTCTTCACTAAAGCTACTGATCTAGCTAAGATGGCTAAAGCAGACCCTGCATTTAATAAGCTTCCTGAGAATGCTCAGATGAACGTATTAGAAGGTGCATACGCTAAGATGAATGATGTAAATGCATTCCAGTATGTACCTGATGGTGACTTGAAGAAGTTCATTAGTCGTGAATCTCAGAACTATCAGAAGGATCGTGTGAATCAATTTAACCAACAGAAAGAAGCTGCTTTTGAGCAGGCTTATCAATCTGCAGTTAAAGAGTTTCGTGCAGTAGGGCAACAACCCCCTAGTCGTGAAGGCTTTAGACAGTTGGTAGATCCACAAGCTCCTGCTCCTAAGAAGCAACAGAGTAATGCACAGAAGGCAACTGCAGCTGTAACTCCTAGAGCTACACGAGCTGTACAAGCTCCAAGTTATATTACTCAAGGTGCTCGTATTAACTCTCGTAATGAAGCTCTAAGCCAAGCTAGGGAGAGAAGTACTAACGTAGCAAACGCTCCAACACGTAAAGAGTTAGATGCACTGAAGGCTGAAGCCTTGCGTAAAGCTAATACTAAGCGAGAGGAAGAGGCTGCAAAAGCAGCATTTAAGAAACTCCAAGAGGCTAATAAGAACAAGCCTTTGAGTCCTGAAATGCAGAAACTACTCAAACGATATGGAGGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
391274f390701341fb2cec8f45fadb3a865b1cf324e4b89d2509ef6ce86ffef3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7320
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The characteristics and genome analysis of VB_ApiP_XC38, a novel N4-like phage Infecting Acinetobacter pittii Cheng,M. 2020-05-25 — GenBank