Protein

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Genbank accession
YP_009140535.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKVLGNLPIIKDVNSVYPFGAAIKNQTETEQGTPAIREIYNDVLMNIYKILQLTGVNPSNEEDNNYNGYQIIEALKKLPNSLNDIEQILTLDGTVWTVPFDLQYLPNKYMFVARASENYNPAITYTFKGLGVTELPFNPINGFSATDELLVIIDTSGVRSYSLNKPTEASSIVYTGTGQVVTFNDLNTVYYYNNNFSSGWLVADTPNSCDILNIVRLFASRATLEIKDIFIHNNTIVCFCFDPSDVAYFIYDVDLTKLTVSFNIELSNDADSNYDPVAYMDENGDLWMTNRGNLNGGVNDNEVYKFVRNGLGIFTFNSTITLGVSFVKTRNAAIKHGFLYTHFELYLNKYNLTTGALTSSVYFPAIGQLMQLNGEVYFNSGYIAKRFDL
Physico‐chemical
properties
protein length:389 AA
molecular weight: 43691,71380 Da
isoelectric point:4,60319
aromaticity:0,13111
hydropathy:-0,08123

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009140535.1
1 389
Domain Start End Length (AA) Confidence
N-terminal 1 119 119 0,9779
Central domain 120 318 200 0,1974
C-terminal 319 389 70 0,9796
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-119
Central
120-318
C-terminal
319-389

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage FCL-2
[NCBI] 		908819 Uroviricota > Caudoviricetes > Ficleduovirus >
Host Flavobacterium columnare
[NCBI] 		996 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009140535.1 [NCBI]
Genbank nucleotide accession
NC_027125 [NCBI]
CDS location
range 24081 -> 25250
strand +
CDS
ATGAAAGTGTTAGGAAATTTACCAATAATAAAAGATGTTAATTCTGTTTATCCTTTTGGAGCAGCTATAAAAAATCAAACTGAAACTGAACAAGGTACGCCAGCAATTAGAGAAATTTACAATGATGTTTTAATGAATATTTATAAAATTTTACAGTTAACTGGCGTAAATCCATCTAATGAAGAAGATAACAATTATAATGGTTATCAAATAATTGAAGCTTTAAAGAAGTTGCCAAATAGTTTAAATGATATTGAACAAATATTGACGTTAGACGGTACAGTTTGGACAGTACCGTTTGATTTACAATATTTACCAAACAAATATATGTTTGTTGCTAGGGCATCAGAAAATTATAACCCTGCTATAACCTACACCTTTAAAGGTTTAGGAGTTACTGAACTTCCTTTTAATCCTATAAATGGTTTTAGTGCTACAGATGAATTGTTAGTTATTATTGACACGTCAGGAGTAAGAAGTTATTCTTTGAATAAACCAACAGAAGCATCAAGCATAGTTTATACTGGCACGGGGCAAGTAGTTACGTTTAACGATTTGAATACTGTTTATTATTACAATAATAATTTCAGTAGTGGTTGGTTGGTTGCCGATACGCCTAATTCATGCGATATTTTAAATATAGTTAGGTTATTTGCATCAAGAGCTACGTTGGAAATAAAAGACATTTTTATACACAACAATACTATTGTTTGTTTTTGTTTTGATCCATCAGATGTAGCTTATTTTATTTATGATGTGGATTTGACTAAATTAACAGTTTCATTTAATATTGAGTTGTCAAATGATGCGGATAGTAATTATGACCCAGTCGCTTACATGGATGAAAACGGTGATTTATGGATGACAAATAGAGGAAATTTAAACGGTGGGGTAAACGATAATGAAGTATATAAGTTTGTTCGTAATGGTTTGGGTATTTTCACCTTTAATTCTACTATTACTTTAGGTGTTTCTTTTGTAAAAACTAGAAATGCAGCAATAAAGCATGGTTTCTTGTATACTCACTTTGAATTGTACTTAAATAAGTATAATTTAACTACTGGAGCATTAACCTCAAGTGTGTATTTTCCTGCTATTGGTCAGTTAATGCAATTAAACGGGGAAGTTTACTTTAATTCAGGGTATATAGCCAAAAGATTTGATTTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d8abc520543027375ff683d45bec9a32dc1059ae504f76172c5ab54a58a2768a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6363
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The use of phage FCL-2 as an alternative to chemotherapy against columnaris disease in aquaculture Laanto,E., Bamford,J.K., Ravantti,J.J. and Sundberg,L.R. 2015 26347722 GenBank
Phage is efficient in rescuing fish from an environmental pathogen Laanto,E., Bamford,J.K.H., Ravantti,J.J. and Sundberg,L.-R. 2011-11 — GenBank