Protein

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Genbank accession
YP_009219046.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MTTKVIFTFHNPDGSPQAGKEFSVRLTRPGMNDADDCIVLPESYDMTTDAQGQFTMDLEAATSAYRVSVVDDDSFEDDPCIRTSFTFYVPDSPTPVHVQELILLPPPTSLPWDEEAMNKITQAVVDAREARDEAEGHADRAEEQVVLAKAEVVKAKDEVTKAQTEVAKAAQQVDLAKVEVGKAAASAAAAKVSETNAANSAAGAAASATAATNQANRAKTEADRAESLANQVAEKVEGGNLPALVGMNETFTYEGGEDHYNWTRTGPVSVSQHTGFIRISKTDASSNRAFIRKSVEFPDDHWITYFRVKTQTGTAAQNNSAQIRFLAADGKDYTVYFNINANGLVEPNTIHMQGSEGGARNAATMFTGLNTEAWMDMAVKFDAVNRHIELFRRMPNGTWQKGGGRLMVDTIKPAVIEISSMPVAPNGWWMDVDFITVCRPNLICYGDSIAAGQNEYGVTRGTAEYHNHRNWAGTWFGQSSLYATNRNNLVLVQGVEGRRTWQYLDSLGEIENSGVKVVFLHASTNDHKDATMTMAKRTSDTQAIVDRLHVVGAQVVLFNAMQGTKAFNDSLAEGVIKLKAYTDQWWTEELHKVTGLGQVLDIARVVGKDGYFDPAIAADDGLHLSAASAKKIADKLGQFYSNSTSINGLAPLESPAFTGIPTVPTQTPFLPYGKQIANTEYVVTFIQDWTSNYGYGDLTMRNKTGAQMAAGGVRSGYYYVPGDSSNPLPGNIYAFVHHMSYDNNKGWELWNQCYSDRMYMRYSNNQGVWQTPVEVVTEKWMDRNSFMTPRVTAFNRLPVASAAGYEGVVPLQAGSSGAWRNLNTGSAGIGLLGAATVENALNYIGGTPKTMTSLRSYSDANAIPNECGFYGVGIAPWANLPPGVTSINPVGSTIYHQVYDASTATQIFIPRTSDICYFRRKAANVWSPWVRYLTDKQLVGTTTNSSTGEPNGAIMESGTTANGWYIRFADGTQMAGARTEPGLPAGANVIQLPASFVSGFNTAVTCNWIPSSNWPTNAGQGVRGAYLNSGSTVSFATAQAAGANDTIMIMAVGRWY
Physico‐chemical
properties
protein length:1056 AA
molecular weight: 114508,48300 Da
isoelectric point:5,38313
aromaticity:0,09564
hydropathy:-0,30104

Domains

Domains [InterPro]
DC_0123
ATT
1–153
DC_0123 Coil IPR036514 DC_0857
DC_1375
STR
115–755
DC_1375 cd19958
Coil
Unmapped
124–179
Coil SSF52266
cd00229
ENZ
442–639
cd00229
IPR013830
ENZ
444–627
IPR013830
YP_009219046.1
1 1056
Architecture
ATT
STR
ATT 1-153 | STR 154-1056
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009219046.1
1 1056
Domain Start End Length (AA) Confidence
N-terminal 1 236 236 0,9927
Central domain 237 487 252 0,4850
C-terminal 488 1056 568 0,8108
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-236
Central
237-487
C-terminal
488-1056

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage KPP21
[NCBI] 		1678082 Uroviricota > Caudoviricetes > Schitoviridae > Luzseptimavirus > Luzseptimavirus KPP21
Host carbapenem-resistant Pseudomonas
[NCBI] 		286 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009219046.1 [NCBI]
Genbank nucleotide accession
NC_029017.1 [NCBI]
CDS location
range 57408 -> 60578
strand -
CDS
ATGACCACCAAGGTGATCTTCACCTTCCATAACCCGGATGGCAGTCCACAGGCCGGAAAAGAGTTTTCCGTCCGACTGACCCGTCCGGGTATGAACGATGCGGATGACTGCATCGTCCTACCTGAAAGCTATGACATGACCACGGATGCTCAGGGTCAGTTCACGATGGATCTGGAGGCAGCTACTTCGGCATACCGGGTTTCCGTAGTGGATGACGACTCGTTCGAGGATGATCCGTGCATTCGCACGTCGTTCACCTTCTACGTGCCGGACTCCCCCACTCCCGTTCATGTACAGGAACTGATCCTGCTGCCTCCGCCCACGTCTCTGCCGTGGGACGAGGAAGCCATGAACAAGATTACCCAGGCTGTCGTCGATGCCCGTGAGGCTCGCGACGAAGCCGAGGGGCATGCTGATCGTGCCGAAGAGCAGGTAGTCCTGGCCAAGGCTGAAGTCGTCAAGGCCAAGGATGAGGTGACCAAGGCTCAGACTGAAGTAGCTAAAGCTGCTCAGCAAGTTGATCTTGCGAAGGTTGAAGTCGGTAAGGCGGCTGCTTCTGCTGCTGCGGCCAAGGTCAGCGAAACCAATGCCGCGAATTCCGCTGCTGGTGCTGCTGCCTCGGCGACTGCTGCTACCAACCAAGCCAACCGTGCGAAGACGGAAGCTGATCGTGCCGAATCCCTGGCAAACCAGGTAGCTGAAAAGGTAGAAGGTGGCAACCTACCTGCACTGGTAGGGATGAACGAAACCTTTACCTATGAAGGCGGCGAGGACCACTACAACTGGACTCGTACTGGCCCGGTGTCTGTCTCTCAGCACACTGGTTTCATCCGGATTTCTAAGACCGATGCATCCAGCAACCGAGCTTTCATCCGAAAGTCTGTCGAGTTCCCGGATGACCACTGGATCACCTACTTCCGGGTGAAAACCCAGACGGGTACTGCTGCACAGAACAACTCGGCCCAGATTCGTTTCCTTGCTGCTGATGGCAAGGACTACACGGTCTACTTCAACATCAATGCCAATGGTTTGGTGGAGCCGAACACCATCCATATGCAGGGTAGCGAAGGTGGGGCACGTAACGCTGCAACCATGTTCACTGGTTTGAACACCGAAGCATGGATGGACATGGCAGTGAAGTTCGATGCCGTGAACCGCCACATTGAACTGTTCCGTCGGATGCCCAATGGCACCTGGCAGAAGGGTGGTGGTCGCTTGATGGTGGACACGATCAAGCCTGCGGTCATCGAGATCTCTTCCATGCCTGTTGCACCCAATGGGTGGTGGATGGACGTGGACTTCATCACGGTATGCCGACCGAACCTCATCTGCTACGGCGACAGCATTGCTGCTGGCCAGAACGAGTACGGGGTAACCCGTGGTACTGCGGAATACCATAACCACCGTAACTGGGCAGGAACCTGGTTTGGCCAATCCAGCCTGTACGCCACCAACCGGAACAACCTGGTCCTGGTGCAAGGCGTAGAAGGTCGGCGTACCTGGCAGTACCTGGATAGCCTGGGCGAGATCGAGAACTCCGGCGTGAAAGTGGTGTTCCTGCATGCGAGCACGAATGACCACAAAGACGCCACCATGACCATGGCCAAGCGTACTTCGGACACCCAAGCCATCGTGGATCGACTGCACGTTGTTGGTGCTCAGGTGGTCCTGTTCAACGCCATGCAAGGCACCAAGGCATTCAACGATTCGTTGGCCGAGGGGGTGATCAAGCTCAAGGCGTACACCGACCAATGGTGGACCGAGGAACTACATAAGGTCACTGGTTTGGGTCAGGTGCTGGACATCGCCCGTGTGGTAGGCAAGGACGGTTACTTCGACCCTGCTATCGCTGCTGACGACGGACTACATCTGTCCGCTGCATCTGCGAAGAAGATCGCCGACAAGCTGGGACAGTTCTACTCGAACTCCACTTCCATCAATGGTTTGGCTCCGCTGGAAAGCCCTGCGTTTACCGGTATTCCTACCGTACCCACGCAGACTCCTTTCCTGCCCTACGGCAAGCAGATCGCTAACACCGAGTACGTCGTTACCTTCATTCAGGACTGGACCAGTAACTACGGTTACGGCGACCTGACGATGCGTAATAAGACCGGTGCTCAGATGGCAGCTGGTGGTGTTCGTAGTGGTTACTACTACGTTCCTGGGGATTCTTCTAACCCCCTACCGGGAAACATCTATGCATTCGTGCATCACATGTCCTACGACAACAACAAGGGTTGGGAACTCTGGAACCAATGCTATTCCGACCGCATGTACATGCGTTATTCGAACAACCAGGGTGTCTGGCAAACTCCGGTAGAGGTGGTTACTGAGAAGTGGATGGATCGCAACAGCTTCATGACTCCTCGGGTTACCGCATTCAACCGTCTGCCTGTAGCTTCTGCTGCCGGTTATGAAGGGGTTGTCCCCTTGCAAGCTGGCTCCAGTGGTGCATGGCGTAACTTGAACACTGGCTCTGCTGGGATCGGATTGCTAGGTGCCGCCACGGTCGAGAATGCGTTGAACTACATCGGTGGTACTCCGAAGACGATGACCAGTCTCCGGTCCTACAGCGATGCCAACGCCATCCCGAATGAGTGTGGCTTCTACGGTGTTGGGATTGCACCCTGGGCGAACTTGCCTCCAGGTGTAACCTCCATCAACCCGGTGGGTTCTACCATCTACCATCAGGTTTACGATGCCAGCACTGCTACGCAGATCTTCATTCCTCGTACTTCGGATATCTGCTATTTCCGCCGTAAGGCTGCGAACGTCTGGAGTCCTTGGGTACGCTATCTGACCGATAAGCAGTTGGTAGGCACCACTACCAACAGCAGCACCGGGGAACCGAACGGTGCCATCATGGAAAGCGGTACAACTGCCAATGGCTGGTACATCCGATTCGCTGATGGGACTCAAATGGCAGGTGCAAGAACTGAACCTGGTCTGCCTGCTGGCGCCAATGTGATACAGTTGCCTGCCTCTTTCGTGTCTGGCTTCAATACCGCAGTAACCTGCAACTGGATCCCCTCTTCTAACTGGCCTACCAACGCTGGCCAAGGGGTTCGGGGGGCTTACCTGAATAGTGGTAGCACTGTTTCTTTTGCTACTGCACAGGCAGCCGGGGCTAACGACACTATCATGATCATGGCCGTAGGGAGATGGTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6dd1bc1187bd3ff00c8b5e44ffbcf3ec5dc204ac33d1ac85af5f25af6724d357
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6640
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Pseudomonas aeruginosa phage KPP21 belonging to family Podoviridae genus N4-like viruses, isolated in Japan Shigehisa,R., Uchiyama,J., Kato,S., Takemura-Uchiyama,I., Ujihara,T., Sakaguchi,Y., Okamoto,N., Shimakura,H., Daibata,M., Sakaguchi,M. and Matsuzaki,S. — — GenBank