Protein

View in Explore
Genbank accession
QBX25064.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MTRNNVRIAIRDSTDSHNVAFFDNKAGIKYKSANLQRFLAGSASILTLKYNSKDIDSIRSGCKLAFCYKARDYWLNVMSFEKKGFEVELTAYSLGLELNNETRGEHKPANAMSIAEYVAYYDPEHALTIGVNEVSDKRIKLEWTGTDTILARLFSVANSFDAELDFSVELNDDYSLKRQVLNIYKKGNLGTNKISQPVRVGKELKVINYSDNIKELKTAVRATGKDGLTIDGLNKKIYDDNKELLYYSSGMTVYAPQSRDRFPSVGKGSNDNWIVEDLGETQYETKEALWGYLYGEIQKKSLPEITYDVEGAIEAGIGDTQILIDDAHFEPALYVQARVSELEDDILTGKVTKSTFINFERKYSQIADSLLKQVEALAEDAAPYIVRLSTDNGYNFKNGQGTSTITAKLEKYSKIVNASWKWLINNSIASETSSITINASQVIGTLNVVAVASVGGNEVAREYITFTNSDDGVGIKSIKRYYTTNDQVEGVTAGGQNWSTKPTTVTADKNYMWSYDVITYTNDTSLVTEPAVIGARGDDGLDADTTGITEALDKAKQELTALSANIEKVRDDSLAAVEEAKQQLTTVANDLNSAKQDLQAQASQLTAQANAQSELTKRVSSVEETANGTKTTVSELSKTVDSNTKNITSVTARTKTVEDDLTSTKTTLSQVKTTADNTNQKTATLETGLNVVKADLAATTVTADTTKTNLANYQASNDKAVANLQSNIQTANGNISSLQTKVEAVPGQITSAVSAVEGKIPTSFGGRNYITNRPINWQNKYVYTNGAGTNSFFQMNSATRISPKEFIAVEAGKQYTISLRELTDADYYFKVTMSTVAAYGVANSMLNRDEWIYSDSYTFTAPENCNYIMISVGCDAGVTPDDLNSKFNIKLEQGTIASDYTPAIEDTAQDISNLSSELAQTKDGMTLLATKTELNTAKTDLQSGITTATNKANTAQSTADNNAKTISTHTTQISALNTGLSAKVSQTDFNTLSGRVTTAENNITAKANELSSKISSVEGNIPSGEMNLVEYGRPADGYSPYKNAEYSTHPFYYNSAYKMYIIKNTATSEKNLGMNRFKVERNTDYALYFKGFNNSAITHMDVWFLKRVNGSTKDFDSAQILVSGRKLSVSKAEDVSVTFNTGNYDEGFIRFDNNGSTTAGTEAQLFFGDVSVKKGKSNNGWSPSQAELASSQDLKTAQSEIKQTTDSIKASVSALDNATVKTATLNLDNNGFVTKVGKTVNGNTFATMIAQSESDVQIIAKKMKVSGDMIVNGAITAEKLNINSLSALSAKLGDVTSGSITNAFSSSTRSGSIKIKDNVEITSTDTSNLLPEKAKENLVLSTGSLAMNASTSSDEATHSMLIMPETIKYTKNNYDTTRGGTNGWRLTHNGYYSMLQVDMVWQNVRLNNTSNMPYGIKANYVRIGNLVTISVNRQITNVAVVAENNLANETIPEGFRPITQAHLTLTGNIGSTIDATCICHLNPDGSIYFTNNKTGNRVWSGTVTYTCVEPMPYVKDLNNGSTI
Physico‐chemical
properties
protein length:1523 AA
molecular weight: 165908,62280 Da
isoelectric point:5,35795
aromaticity:0,07617
hydropathy:-0,41569

Domains

Domains [InterPro]
DC_0266
STR
2–529
DC_0266 SSF57997 DC_1024
PTHR45615
Unmapped
551–752
PTHR45615
Coil
Unmapped
552–572
Coil Coil DC_1398
G3DSA:1.20.5.170
STR
609–756
G3DSA:1.20.5.170
Coil
Unmapped
721–741
Coil
QBX25064.1
1 1523
Architecture
STR
STR
STR
STR 2-529 | STR 549-1083 | STR 1167-1523
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan226
[NCBI] 		2548055 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus gallolyticus
[NCBI] 		315405 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25064.1 [NCBI]
Genbank nucleotide accession
MK448879 [NCBI]
CDS location
range 28463 -> 33034
strand +
CDS
TTGACAAGAAATAATGTACGTATTGCGATTCGTGATTCAACAGATAGCCACAATGTGGCTTTTTTTGATAATAAGGCAGGAATCAAATATAAGAGTGCTAATTTACAACGTTTCTTAGCAGGTTCAGCAAGTATTTTAACGCTTAAATACAACTCAAAAGACATTGACAGTATTCGTTCTGGGTGTAAGCTTGCTTTTTGTTATAAAGCTCGCGACTATTGGCTTAATGTCATGAGCTTCGAGAAGAAAGGTTTCGAAGTTGAATTGACCGCTTATTCGCTCGGTCTTGAATTAAACAATGAAACTCGTGGCGAGCATAAGCCAGCGAACGCTATGTCAATCGCTGAATATGTGGCTTATTATGACCCTGAGCACGCTTTAACAATCGGCGTTAACGAAGTATCTGACAAGCGAATCAAATTGGAATGGACGGGCACAGACACGATTCTAGCACGTCTTTTTTCTGTTGCGAACAGTTTTGACGCAGAACTTGATTTCAGCGTTGAACTTAATGACGATTACTCACTTAAACGTCAAGTGTTGAATATCTATAAAAAAGGCAATCTTGGCACAAACAAAATCAGTCAACCTGTAAGAGTTGGCAAAGAGCTTAAAGTCATTAATTACAGCGATAATATCAAAGAGTTAAAGACTGCTGTTCGAGCAACTGGTAAAGACGGTTTAACCATTGACGGCTTAAACAAGAAAATCTACGACGATAATAAAGAACTACTTTATTATTCGAGCGGTATGACTGTCTATGCGCCGCAATCTCGTGACCGCTTTCCGTCTGTCGGCAAAGGTTCAAATGACAATTGGATTGTCGAAGATTTAGGTGAGACACAATACGAAACTAAAGAAGCGCTTTGGGGTTATTTGTACGGTGAAATTCAAAAGAAATCTTTGCCAGAAATCACTTATGATGTTGAAGGAGCTATCGAAGCTGGAATCGGAGACACTCAAATCTTGATTGATGATGCTCATTTTGAACCAGCGCTTTATGTGCAAGCTCGAGTATCAGAGCTTGAAGATGATATCTTGACAGGCAAAGTGACAAAATCAACGTTTATCAACTTTGAACGCAAATACAGTCAGATTGCAGACAGCTTATTAAAACAGGTTGAAGCACTCGCAGAAGACGCAGCGCCTTACATTGTCCGTTTATCAACCGATAACGGCTACAATTTTAAAAACGGTCAAGGTACAAGCACAATCACAGCTAAACTCGAGAAGTATAGCAAGATTGTTAATGCAAGTTGGAAATGGTTAATTAATAACAGTATTGCCAGCGAGACTTCAAGCATTACAATCAACGCTAGTCAAGTTATTGGCACGTTGAATGTTGTGGCAGTTGCAAGCGTTGGCGGTAACGAGGTGGCTCGTGAATATATCACATTTACTAATAGCGATGACGGTGTTGGTATTAAATCAATCAAGCGCTATTACACGACTAACGACCAAGTCGAGGGCGTAACAGCAGGCGGTCAAAACTGGTCTACCAAGCCAACAACTGTTACGGCGGACAAAAATTATATGTGGTCTTATGACGTCATCACTTACACGAATGACACAAGTCTAGTAACAGAACCAGCTGTCATTGGTGCTCGTGGGGATGATGGGCTAGATGCCGACACGACAGGCATCACAGAAGCGCTTGACAAAGCTAAGCAAGAATTGACTGCTTTATCAGCAAATATCGAAAAGGTGCGAGATGATTCGCTTGCAGCTGTCGAAGAAGCCAAACAGCAACTCACTACAGTCGCTAACGATTTAAACAGTGCTAAGCAGGACTTGCAAGCACAAGCTAGTCAGTTGACTGCACAAGCTAACGCACAGTCTGAACTAACCAAACGTGTAAGTAGTGTTGAAGAAACTGCTAACGGCACTAAGACGACTGTCAGCGAGTTAAGCAAAACAGTAGATAGTAATACCAAAAATATCACTAGCGTTACTGCACGAACCAAAACCGTTGAAGATGACTTAACAAGCACTAAAACGACTTTGTCACAAGTTAAGACGACTGCGGACAATACCAATCAAAAAACAGCTACTTTAGAAACTGGGTTGAATGTTGTTAAGGCTGATTTAGCTGCAACTACAGTAACTGCCGACACGACTAAGACTAATCTTGCTAACTATCAAGCTAGCAACGATAAGGCAGTGGCTAACTTGCAAAGCAATATACAAACAGCGAATGGCAACATTAGCAGTCTGCAAACGAAAGTTGAAGCAGTACCTGGACAGATTACAAGCGCAGTGTCAGCTGTTGAGGGCAAGATTCCGACGAGTTTCGGTGGTAGAAACTACATTACTAACCGTCCAATAAATTGGCAAAACAAATACGTCTATACCAACGGTGCTGGCACTAACTCGTTTTTTCAAATGAACAGCGCGACACGAATTTCGCCGAAAGAATTTATTGCAGTTGAGGCTGGCAAGCAGTACACAATCTCGTTGAGAGAGCTGACTGACGCTGATTATTATTTCAAAGTCACGATGTCAACTGTTGCTGCGTACGGCGTAGCAAACAGCATGCTAAATAGAGATGAATGGATATATAGCGATAGTTACACGTTCACAGCACCAGAGAATTGCAATTACATCATGATTTCAGTCGGTTGCGATGCTGGCGTAACACCTGATGATTTGAATAGTAAATTTAACATCAAACTTGAGCAAGGTACGATAGCGAGCGATTACACACCAGCAATCGAAGACACAGCGCAAGACATCTCGAATCTGTCGTCAGAGCTCGCTCAAACCAAAGACGGCATGACGTTGCTTGCTACGAAAACAGAGCTAAACACAGCTAAAACTGATTTGCAAAGTGGTATCACGACAGCGACCAATAAAGCTAATACAGCCCAAAGCACAGCTGACAACAACGCTAAAACAATCAGTACGCATACGACACAGATTTCAGCACTTAATACAGGGCTTTCTGCCAAAGTCTCACAGACTGATTTCAATACGCTGTCTGGTCGTGTAACAACTGCAGAAAATAATATTACAGCTAAAGCTAACGAGTTAAGCAGTAAGATTAGTAGTGTCGAAGGTAATATTCCAAGCGGTGAAATGAACCTTGTCGAGTATGGCAGACCAGCTGATGGCTACAGTCCATATAAGAATGCAGAATACTCAACACACCCATTTTATTACAATAGCGCTTATAAAATGTATATTATTAAAAATACAGCTACAAGCGAAAAAAACTTAGGCATGAATCGCTTTAAAGTTGAACGTAATACTGATTACGCTTTGTATTTTAAAGGTTTTAACAATAGCGCTATTACTCATATGGATGTCTGGTTTTTGAAGCGTGTTAACGGAAGTACAAAGGATTTTGACTCAGCTCAAATCTTAGTTAGCGGTCGCAAGTTATCAGTTTCAAAAGCAGAAGATGTTTCAGTAACTTTCAATACTGGTAACTATGATGAAGGGTTTATTCGTTTTGATAACAATGGTTCAACAACTGCGGGTACGGAAGCTCAGCTATTTTTTGGTGATGTTTCAGTTAAGAAAGGCAAATCAAACAATGGCTGGAGCCCTTCACAAGCTGAACTAGCAAGTAGTCAAGATTTAAAGACTGCGCAGTCTGAAATCAAGCAGACGACTGATTCAATCAAAGCTAGCGTGTCTGCGTTGGATAATGCGACGGTTAAGACGGCAACGCTTAATCTTGACAATAATGGCTTTGTTACCAAAGTCGGTAAAACCGTTAACGGAAATACTTTCGCGACAATGATTGCTCAAAGTGAATCAGATGTTCAAATTATCGCTAAGAAAATGAAAGTTAGCGGTGACATGATTGTCAATGGTGCGATTACAGCAGAAAAACTAAATATTAATAGCTTGTCTGCGCTTAGTGCAAAACTCGGTGATGTGACTTCTGGTTCAATCACGAACGCTTTCTCATCTAGTACGCGAAGTGGAAGTATCAAAATTAAGGACAATGTTGAAATCACATCAACAGACACCTCTAATTTATTACCTGAAAAGGCAAAAGAAAATTTAGTGCTATCAACTGGAAGCTTAGCAATGAATGCTAGCACATCAAGCGATGAAGCAACACACTCAATGCTAATCATGCCAGAGACAATCAAATATACTAAGAATAATTACGACACTACTCGAGGTGGTACGAATGGGTGGAGATTGACACATAACGGCTACTATTCAATGCTTCAAGTTGATATGGTTTGGCAAAATGTACGGCTTAATAATACGTCAAATATGCCTTACGGAATAAAAGCTAACTATGTTCGAATCGGTAATTTGGTGACTATTTCAGTTAACCGCCAAATTACAAACGTGGCAGTTGTAGCAGAAAACAATCTAGCAAATGAAACAATTCCAGAAGGCTTCCGACCAATCACACAAGCACACTTAACGTTGACTGGGAATATTGGTTCGACAATTGACGCAACGTGTATTTGTCACTTGAATCCAGATGGTTCAATTTACTTTACCAACAACAAAACGGGCAACCGCGTTTGGTCTGGTACAGTTACTTACACCTGCGTTGAGCCTATGCCTTACGTTAAAGATTTGAATAACGGTTCTACAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a99e6ebabe0cde8110aa6e689c7bf27177e01117b65a7af51e1eaff197014807
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7588
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank