Protein

View in Explore
Genbank accession
YP_009789401.1 [GenBank]
Protein name
minor structural protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,89
Protein sequence
MYINNGRINYNNEYGYRRGIYREPFYSDNADYNTNSKSYYDYLARFNGFIFELCDFVNGLADDIQKMKETYDALTLSNTDVTYTVGQKGDFDTLNHCFDYIENLIVQPKSIRVILLKDYMMREQLFLRDKRYNHITITSENDIVEAYETELNRQIEIKTNPIFRVKPLFYGINSTFPKIDFKLQNKDFSDTINCGFLMDNTTFEMTERGGSTHFNFIGLCGVNGSHIQTNYCDFSYNGNREQLEEYNKDQNMYGDGLRIFNSSLTGNYMTVNRCGEIGIHFSHGASGYIDFTEARFNGHHGLMVTTGSQASARNCKITDTIDDNVVSYASSDIDLRSSDCSNSQTTYGVIATRSSNINFDKGIANGCGASGIMANRGCSIDATGATASRNKWHGVIASNNSKVDFTSGNANENGLDGIQCTHGSTVQARLSTTNGNKRNGVLAYAGDVYCQEINCDGNGSRGLEATRGGYVAAYGAKVSRSKDDNVLAYGSVISVNEAVIERAGRNGIEATRGGQIFADRITITGSGDFGILAYASKVFAEASNISGTKNEPVYATRGGEITCFGSNISSNKTVYNVYNGSRIFTDKDHGYSTNIEPNTMDSKGFIIKG
Physico‐chemical
properties
protein length:609 AA
molecular weight: 67341,58840 Da
isoelectric point:5,57508
aromaticity:0,10837
hydropathy:-0,48686

Domains

Domains [InterPro]
DC_1478
STR
4–609
DC_1478
IPR012332
STR
221–448
IPR012332
IPR039448
ENZ
301–448
IPR039448
YP_009789401.1
1 609
Architecture
STR
STR 4-609
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009789401.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1653
Central domain 11 598 589 0,9291
C-terminal 599 609 10 0,2235
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-598
C-terminal
599-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage St 134
[NCBI] 		1958922 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009789401.1 [NCBI]
Genbank nucleotide accession
NC_047814 [NCBI]
CDS location
range 12632 -> 14461
strand -
CDS
ATGTATATAAATAACGGTCGAATCAATTATAATAATGAATATGGTTATCGTCGTGGCATATATCGTGAACCATTTTACAGTGATAATGCAGATTATAATACCAATTCAAAATCATATTATGATTACTTAGCACGTTTTAATGGTTTTATTTTTGAATTATGTGATTTTGTTAATGGACTAGCAGATGACATACAAAAAATGAAAGAAACATACGACGCTTTAACGTTATCAAATACAGATGTCACATATACAGTAGGACAAAAAGGTGATTTTGACACATTGAATCATTGTTTTGATTACATTGAAAATTTAATTGTTCAACCTAAATCAATACGTGTCATTTTACTTAAAGATTATATGATGCGCGAACAATTATTTTTACGTGATAAGCGTTATAATCACATTACGATTACATCAGAAAATGATATTGTTGAAGCCTATGAAACAGAATTAAACAGACAAATAGAAATTAAAACAAATCCTATTTTTAGAGTAAAACCCCTATTTTATGGTATTAATTCTACATTTCCTAAAATTGATTTTAAACTACAAAATAAAGACTTTTCAGATACCATTAATTGTGGTTTCTTAATGGATAATACAACGTTTGAAATGACTGAACGTGGAGGTTCTACACACTTTAATTTTATTGGTTTATGTGGTGTCAATGGTTCACATATTCAAACCAACTATTGTGATTTTTCGTACAATGGCAATCGTGAACAATTAGAAGAATATAATAAAGACCAGAATATGTATGGTGACGGATTAAGAATTTTTAATTCATCATTAACAGGTAATTATATGACAGTCAATCGTTGTGGTGAAATTGGAATACACTTCTCACATGGTGCAAGTGGTTATATTGATTTTACCGAAGCAAGATTTAACGGACACCATGGTTTAATGGTGACAACTGGTTCACAAGCGAGTGCAAGAAACTGTAAAATCACTGATACAATTGATGATAATGTTGTAAGTTATGCGTCAAGTGATATTGATTTAAGAAGTAGTGATTGTTCAAATTCACAAACAACATACGGTGTCATTGCAACACGTTCATCAAACATTAACTTTGATAAAGGCATTGCTAATGGTTGTGGTGCAAGTGGAATTATGGCAAACAGGGGTTGTTCTATTGACGCCACAGGGGCAACGGCTTCACGTAATAAATGGCATGGTGTCATAGCAAGTAATAACTCAAAAGTTGATTTCACAAGTGGTAATGCAAATGAAAACGGACTTGACGGAATCCAATGCACACATGGTTCAACTGTTCAAGCAAGATTATCGACAACGAATGGAAATAAACGTAATGGTGTGTTAGCTTATGCAGGTGATGTGTATTGTCAAGAAATTAATTGTGACGGTAACGGTAGTCGTGGATTAGAAGCTACACGTGGTGGTTATGTTGCAGCGTACGGGGCAAAGGTTTCACGTTCAAAAGATGATAACGTACTTGCTTATGGTTCAGTGATTTCAGTTAATGAAGCAGTCATTGAACGTGCAGGGCGTAACGGTATTGAAGCGACACGTGGTGGTCAAATATTTGCAGATAGAATCACAATAACAGGTAGTGGCGACTTTGGTATTTTAGCTTATGCGTCTAAAGTGTTTGCCGAAGCGTCAAATATTAGTGGTACTAAAAATGAACCTGTTTATGCGACACGTGGTGGGGAAATAACATGCTTTGGTTCAAATATTTCAAGTAACAAAACGGTTTATAACGTGTATAATGGTAGTAGGATATTCACAGATAAAGACCATGGATATTCAACAAACATAGAACCTAATACAATGGATAGTAAAGGGTTCATTATAAAAGGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f587f8483bf5afbec25a8042340be1c8cff8fe92c4e14cb5e89efafc36de4ad2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8703
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A lytic phage St 134, specific for pathogenic Stahylococcus epidermidis strains Kozlova,Y., Morozova,V., Tikunov,A., Bokovaya,O. and Tikunova,N. 2024-09-30 — GenBank