Protein

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Genbank accession
YP_009321594.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSRIIDLVSGNSKAESRALILAYEEFAKTKDQVEIPVKHYIHGNMYAREITIPKDTFITGQLYKFDHFDVMISGDITVSTDEGVRKRISGYNVFQGLSGKKRAGYAHEDTTWITFHVAKGEEGEAIQRGLTVDSFEELEEFYLMLDNFSYVEAIKQLGFTEEQVQEQVQNTADMVDLPDAFKHVFLEKSAIHGLGLFSALGYEKNSVVCIARIDGKRTIAGRYANHSHMPNCKMHMAPDGNVLLVSKRRLEPLEELTVDYLDVIKQRVDQGDLCLE
Physico‐chemical
properties
protein length:276 AA
molecular weight: 31261,13990 Da
isoelectric point:5,33857
aromaticity:0,09058
hydropathy:-0,30145

Domains

Domains [InterPro]
DC_0531
STR
2–149
DC_0531 IPR001214
IPR046341
RBD
181–265
IPR046341
IPR001214
RBD
182–261
IPR001214
IPR001214
RBD
182–267
IPR001214
cd08161
RBD
183–260
cd08161
cd08161
RBD
185–260
cd08161
IPR046341
RBD
211–270
IPR046341
YP_009321594.1
1 276
Architecture
STR
RBD
STR 2-149 | RBD 150-270 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage PH1
[NCBI] 		1874540 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas marina DSM 17587
[NCBI] 		1117316 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Pseudoalteromonadaceae > Pseudoalteromonas > Pseudoalteromonas marina

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009321594.1 [NCBI]
Genbank nucleotide accession
NC_031908.1 [NCBI]
CDS location
range 32561 -> 33391
strand +
CDS
ATGTCCAGAATTATTGATTTGGTAAGCGGTAACTCAAAAGCTGAAAGCCGAGCGCTTATATTAGCTTACGAAGAGTTCGCTAAGACTAAAGACCAGGTTGAAATACCTGTAAAGCATTATATTCACGGTAATATGTATGCGCGTGAAATTACAATACCTAAAGATACATTTATAACTGGTCAGTTGTACAAGTTCGACCACTTTGACGTTATGATTAGTGGTGATATAACTGTATCAACAGATGAAGGTGTTCGCAAGCGTATTTCAGGTTACAATGTATTCCAAGGTCTATCAGGCAAGAAGCGAGCAGGTTACGCGCACGAAGACACAACTTGGATTACTTTTCACGTGGCTAAAGGTGAAGAAGGTGAAGCAATACAGCGCGGTCTAACTGTAGATAGCTTTGAAGAGCTTGAAGAGTTTTACCTAATGCTAGATAACTTTAGCTATGTTGAGGCCATTAAACAGCTAGGTTTTACTGAAGAACAAGTACAAGAACAGGTTCAAAATACTGCTGATATGGTAGACTTACCAGATGCCTTTAAGCATGTGTTTTTGGAGAAGTCCGCTATTCATGGTTTAGGGCTTTTTAGTGCTCTAGGGTATGAGAAAAACTCTGTGGTGTGTATTGCTCGCATAGATGGTAAGCGTACAATAGCTGGTAGATATGCCAATCACTCTCACATGCCTAACTGTAAGATGCACATGGCACCAGATGGTAACGTGCTATTGGTGTCTAAACGACGCCTAGAACCGTTAGAAGAATTAACCGTAGATTACCTAGACGTAATCAAGCAACGAGTAGACCAGGGGGATTTATGTCTGGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
664968425fa2a4ea22e3d387e290173234ba41a6b40af33e016dd58c39dacd63
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8147
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of a novel Pseudoalteromonas phage PH1 Liu,Z. 2016-12-09 — GenBank