Protein

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Genbank accession
YP_009322143.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MKASPCVGLFCEVNMRNDLLAAIVSALGGSVTNMNNRNKILVDIVLAAGGTVTNPNDRNMLLQDWLDAAGGVTPEPSSTRIANANGVDQEWELSERLIDVDSLAGLKFEMEFISSDRGGTLISQSTDDGQKEFQVYMAANDIRFSIGGDVTTFSANFAGGVISIEFPTDLTVNVSIDGIPVVTAGVISRGGTRTPTGKTTLLSRHGFYKSGAVINFKHYQDDVLINEIPLTKESDGSIQTPDVGNVTATFTNYDPSVWLEYYGISRVVVFGASIMERSFNTDAGYDELTAADFLNNGIVVEVIEEATGGDVTDDMITKLPALISKYQAGVGRTMFMIHWAGGDTSQDGPYPGGATNINTNCRAMAQSLVDAGFKIAMSTITYRQPPGGNYSDEYNTNVMDAIISDFADIPLDLYTLTFDNKDTYLGSDDVHPTTAGLQMIREWVAEGVSNGMKGDL
Physico‐chemical
properties
protein length:456 AA
molecular weight: 48981,18460 Da
isoelectric point:4,29427
aromaticity:0,08114
hydropathy:-0,09715

Domains

Domains [InterPro]
IPR036514
STR
263–453
IPR036514
SSF52266
STR
265–448
SSF52266
SSF52266
STR
266–448
SSF52266
cd00229
ENZ
267–446
cd00229
YP_009322143.1
1 456
Architecture
STR
STR 263-453 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009322143.1
1 456
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9820
Central domain 85 283 200 0,2497
C-terminal 284 456 172 0,7882
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-283
C-terminal
284-456

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage BS5
[NCBI] 		1874539 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas atlantica
[NCBI] 		288 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009322143.1 [NCBI]
Genbank nucleotide accession
NC_031917.1 [NCBI]
CDS location
range 7048 -> 8418
strand +
CDS
ATGAAAGCCTCACCATGCGTGGGGCTTTTTTGTGAGGTTAACATGAGAAATGACTTACTAGCCGCGATAGTATCGGCTTTAGGTGGGAGTGTTACGAATATGAATAATAGAAATAAGATATTGGTTGATATAGTTTTAGCCGCTGGCGGGACTGTGACTAATCCGAATGATAGAAACATGCTACTGCAAGATTGGCTTGATGCTGCGGGTGGGGTTACTCCTGAACCTTCATCCACGAGAATAGCAAACGCTAATGGAGTAGATCAGGAGTGGGAACTATCAGAAAGATTAATTGATGTCGACTCTCTTGCTGGATTAAAATTTGAGATGGAATTTATAAGTTCAGACAGAGGTGGAACCTTAATATCTCAATCAACTGACGATGGCCAGAAGGAGTTTCAGGTTTATATGGCCGCTAATGACATTAGGTTCAGTATAGGCGGCGACGTCACAACCTTTTCAGCCAATTTTGCTGGTGGTGTCATTTCAATAGAGTTTCCAACCGACCTGACGGTTAATGTTTCCATTGACGGTATACCAGTAGTAACGGCTGGGGTTATATCTAGAGGCGGGACTAGGACGCCAACAGGTAAAACAACCCTACTGTCAAGACACGGATTCTACAAGTCGGGGGCAGTTATAAACTTTAAACACTACCAAGATGACGTGCTTATAAACGAGATTCCGCTAACAAAAGAATCAGACGGTTCGATTCAAACACCTGATGTAGGGAATGTAACTGCCACATTTACAAACTACGACCCATCTGTTTGGTTAGAGTATTACGGTATAAGTCGTGTGGTTGTGTTTGGGGCATCTATAATGGAAAGGTCTTTTAACACTGACGCGGGTTATGATGAACTTACTGCTGCCGACTTCCTAAATAACGGGATTGTCGTAGAGGTCATAGAGGAAGCCACTGGGGGTGATGTTACTGACGATATGATTACAAAACTACCCGCCTTAATATCTAAGTATCAAGCGGGCGTTGGCAGAACAATGTTTATGATTCATTGGGCTGGTGGAGATACTAGCCAAGATGGGCCTTACCCTGGTGGAGCTACTAATATAAACACTAACTGCCGAGCTATGGCGCAAAGCTTGGTTGATGCTGGTTTTAAGATAGCTATGTCTACTATCACCTACCGCCAGCCGCCTGGCGGTAACTACAGTGATGAATATAATACTAACGTTATGGATGCAATAATTTCTGATTTTGCAGACATCCCATTAGATTTATACACACTGACATTCGACAATAAAGATACTTATTTAGGGTCTGATGATGTACACCCTACCACAGCTGGATTGCAAATGATTCGAGAGTGGGTTGCAGAGGGTGTATCAAACGGAATGAAGGGTGATTTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b9a0554728a82bbc5efb9a33e42929bb2d4cbf09885c9f130c44e09246757f4e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Complete Genome Sequence of Bacteriophage PH14: A Novel Broad spectrum Siphoviridae which was isolated from Bohai Sea Meng,X. 2017-04-20 — GenBank