Protein

View in Explore
Genbank accession
WPK38382.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSDIFAGITDAANNLYQDARDRLMGDGTTTLRFRNCGGIKMDAVTNEEHQSDLDIADNELESGAKASDHAAVQPKVITVTGVVVGYIDESIQESTVNDVTGLRSMDFLDDIQLPQVVSTVLEGTRDFAVNKLVSFIDWGGLDATISRSLVPWLPDFSIAEQLKSSDNMRIEQVYRTLLDLQKNVIYCDVDTGIFKYTNMLLKSVRVVQEKDGSATFTLTFREVIEVPIVVTNAVAAKSTGRPANNGTKKSGRAQGQGDATSKKDINTTTPISEKRVNDNRGFGVTLGDMFGFNLRGIF
Physico‐chemical
properties
protein length:298 AA
molecular weight: 32574,24900 Da
isoelectric point:4,81099
aromaticity:0,06711
hydropathy:-0,22752

Domains

Domains [InterPro]
DC_0601
STR
1–292
DC_0601
IPR048494
ATT
41–227
IPR048494
WPK38382.1
1 298
Architecture
STR
ATT
STR
STR 1-40 | ATT 41-227 | STR 228-292 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV127
[NCBI] 		3077272 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK38382.1 [NCBI]
Genbank nucleotide accession
OR352957.1 [NCBI]
CDS location
range 28199 -> 29095
strand +
CDS
ATGAGTGACATCTTTGCTGGAATTACTGATGCTGCCAACAACTTGTACCAGGACGCCCGTGACAGACTCATGGGCGACGGTACAACCACCTTACGCTTCCGCAACTGCGGAGGTATTAAGATGGATGCTGTCACAAATGAAGAGCATCAGTCGGACCTTGACATCGCTGACAACGAACTTGAGTCCGGGGCTAAGGCTTCGGACCATGCTGCAGTACAACCAAAAGTTATTACTGTAACTGGTGTGGTAGTTGGCTATATTGACGAGTCGATTCAAGAGTCAACAGTTAACGACGTAACCGGCTTACGGTCTATGGATTTCTTGGATGATATTCAGCTTCCACAGGTAGTGTCTACTGTCCTCGAAGGAACAAGGGACTTTGCTGTTAACAAGCTAGTCTCATTCATAGACTGGGGCGGTTTAGACGCTACCATTTCACGCTCTTTAGTTCCATGGCTTCCTGACTTTAGTATAGCTGAACAACTTAAGTCTTCGGACAACATGAGGATTGAACAGGTATACCGTACATTGCTGGATTTACAGAAAAACGTTATCTACTGTGACGTTGACACTGGTATCTTCAAGTATACGAATATGCTTTTGAAGTCTGTTCGTGTTGTACAGGAGAAAGATGGTTCAGCTACGTTTACCCTTACGTTCCGTGAAGTCATTGAAGTGCCGATTGTAGTTACAAACGCTGTAGCCGCTAAGTCGACAGGTCGCCCTGCTAATAACGGCACTAAGAAAAGCGGACGTGCACAAGGTCAGGGTGATGCCACCAGTAAGAAGGACATAAACACAACTACACCGATTAGCGAGAAACGTGTAAACGATAACCGCGGTTTTGGTGTAACACTCGGTGACATGTTTGGCTTTAACTTACGAGGCATATTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
dcc4e2d3cd4d783a2785c4d1c81350819f62514cf57a0414e48a9ffdc60a703d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6519
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank