Protein

View in Explore
Genbank accession
YP_010111219.1 [GenBank]
Protein name
VOG8262
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MDIEEKDLGKAIVTVASPEIYDATQAYERLTYVKHNGHVYLSKQDVPVGASPTGGDNDEYWLDYKIAAASCRLGRAYRRITDWNVVRPTGGSYDNPHPVEEEWTAEPTSANGILWYSERLFTEDGRNQDAEWSMPAQLTYTLYTEFYTSNVEKEPGTPDTHPQNWVKGYQEGYIWLATQEVYNDSKQGWVVNLIRGTKIESVEATVDAEVGTPAVVVINKGTELNPKFIFQFTNMKGEHGDRGNYTFIFNGEINPTGNNQTSSVVTPTGITLAVGDNVIDNNGDVYIVRVIGPTTFAVIQDAVQTIRGIDTKRGVVYMRSNNDASVKTPTGGSYDNPVPTESTWNTEIPDGSAKLWVSTRMFTSNGKNQEEAWSTPKNLTYVQYIETWYSTVENNPGNPDDNPDNWSKTGNNFIWIAVRTIYNGNKQEWNIAKVVGKTGATGPTGAPGSNGSDGADGKSASIKSATATVDANVGIPSVDVTVGGTEFERTFDFAFKNLKGQKGDKGDTGKTGEKGDIGVTGKDGKNFTILGYKDSLEQLQTDVPSPAQGDAYGVGTVEPYELYIYDTTKGWVANGTIGGGTSVDVVDNLTTGDADKALSANMGKKLNEDKLAIGDVVNNLTTNDAKKALSAAQGKKLQDEKVEDAPKDGSPYMRKNGAWSAYTQIEEVYTFEPDLTTDKITQEEYNKLKAAVQAGKVIVLKQQDIPGGYVMSISIFMENTINLMYSAGDSFTLLSITSDLNVTVETRYCLLPNNTKEYEVTGNYNPAHKKYVDEAVVANSYKVLPTEVLEITQGMASDDIFNKFGGKSAYLDFVKNTPANSIIRVEGGALCVASIITYTDDNTSTLAIQTLGLNASQYIGVTVSSGTASALTAKYIFVNESDVLTKTNTSAYTPTKDYQPSTKKYVDTAIYGKIINADSGTISSDLVVNGTNLTGIDAEERVKKYFGNLANFRNVVQDIIENHTRYFIHNGNDCRELGCLNVWKNTENTEHELHFILTGFGDGNLHTKRYSIRITENTDDAKFIIENIVSSDNLRTVTKKTSTEYSNINPKLDNTAYLVTDD
Physico‐chemical
properties
protein length:1062 AA
molecular weight: 116330,34350 Da
isoelectric point:4,80815
aromaticity:0,09228
hydropathy:-0,50113

Domains

Domains [InterPro]
DC_1986
ATT
7–69
DC_1986 DC_1936 IPR054500 DC_1427
IPR054500
STR
585–610
IPR054500 G3DSA:1.20.5.320
YP_010111219.1
1 1062
Architecture
ATT
STR
RBD
ATT 7-69 | STR 199-665 | RBD 666-1062
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010111219.1
1 1062
Domain Start End Length (AA) Confidence
N-terminal 1 799 799 0,9385
Central domain 800 1010 212 0,6415
C-terminal 1011 1062 51 0,5664
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-799
Central
800-1010
C-terminal
1011-1062

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr110_1
[NCBI] 		2772070 Uroviricota > Caudoviricetes > Crassvirales > Crudevirinae > Delmidovirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010111219.1 [NCBI]
Genbank nucleotide accession
NC_055879 [NCBI]
CDS location
range 20154 -> 23342
strand +
CDS
ATGGATATAGAAGAGAAAGACTTGGGGAAAGCAATAGTAACTGTTGCAAGTCCTGAAATTTATGATGCAACGCAGGCTTATGAAAGGCTTACTTATGTTAAGCATAATGGACATGTTTATCTTAGTAAGCAAGATGTGCCTGTTGGTGCTTCTCCTACGGGGGGTGATAATGATGAATATTGGCTTGATTATAAAATAGCTGCTGCTTCTTGTCGGCTTGGTCGAGCTTATCGTCGTATTACTGATTGGAACGTTGTTAGACCTACTGGTGGAAGTTACGACAACCCACACCCCGTAGAGGAAGAATGGACTGCTGAACCTACTTCTGCAAATGGTATTCTTTGGTATTCTGAACGTCTTTTTACAGAAGACGGTCGTAATCAAGATGCTGAATGGAGTATGCCTGCTCAGCTTACTTATACTCTTTATACAGAATTTTATACTTCTAATGTTGAAAAAGAACCCGGTACTCCTGATACTCATCCTCAAAACTGGGTAAAAGGTTATCAAGAAGGTTATATTTGGCTTGCTACACAAGAAGTTTATAATGATTCTAAACAAGGTTGGGTGGTTAATCTTATTCGTGGAACTAAAATTGAAAGCGTTGAAGCTACTGTTGATGCGGAAGTAGGTACTCCTGCTGTTGTTGTTATCAATAAAGGAACTGAACTTAATCCGAAATTTATATTCCAGTTTACCAATATGAAAGGTGAACATGGAGATAGAGGTAATTATACTTTTATCTTTAATGGAGAAATTAATCCTACTGGAAATAATCAAACTTCTTCTGTTGTAACTCCTACTGGTATTACTCTTGCTGTTGGAGATAATGTTATTGATAATAACGGAGATGTTTATATAGTTCGTGTTATTGGGCCGACTACTTTTGCCGTTATTCAAGATGCTGTTCAAACTATTCGTGGTATTGATACCAAACGTGGAGTTGTTTACATGCGTAGCAATAACGACGCTTCTGTTAAAACTCCGACTGGCGGTTCTTATGATAATCCAGTTCCTACTGAAAGTACTTGGAATACTGAGATTCCCGACGGTTCTGCTAAACTTTGGGTTTCTACTCGAATGTTTACCTCTAATGGTAAGAACCAAGAAGAAGCTTGGAGTACTCCTAAGAATTTGACTTATGTTCAATATATTGAAACTTGGTACAGTACTGTTGAAAATAATCCCGGCAATCCTGATGATAATCCGGATAATTGGAGTAAGACAGGTAATAATTTTATTTGGATTGCAGTTCGTACTATTTATAATGGTAATAAACAAGAATGGAATATAGCTAAAGTTGTTGGTAAGACTGGCGCTACTGGTCCAACTGGTGCTCCAGGTTCTAATGGTTCTGATGGAGCTGATGGTAAATCTGCTTCTATTAAATCTGCTACTGCAACAGTAGATGCGAATGTAGGAATTCCTTCTGTTGATGTTACTGTTGGTGGTACTGAATTTGAACGTACATTTGATTTTGCTTTTAAAAACCTTAAAGGTCAAAAAGGAGATAAGGGCGATACTGGTAAGACTGGCGAAAAAGGAGATATAGGCGTAACTGGTAAGGATGGTAAAAACTTTACTATTCTTGGATATAAAGATAGTCTTGAACAACTTCAAACAGATGTTCCAAGTCCTGCTCAAGGCGACGCTTATGGTGTTGGTACTGTTGAACCTTACGAATTGTATATCTACGATACTACCAAAGGTTGGGTAGCTAATGGAACTATTGGCGGCGGAACTTCTGTTGATGTTGTAGATAATCTTACTACTGGCGATGCAGATAAAGCTTTATCTGCTAATATGGGTAAGAAGCTTAATGAAGATAAGCTTGCCATTGGTGATGTTGTTAATAATTTAACAACCAATGATGCAAAGAAAGCTTTATCCGCTGCTCAAGGTAAAAAACTTCAAGATGAAAAAGTAGAAGATGCTCCCAAAGACGGTAGTCCTTATATGCGTAAAAATGGAGCTTGGAGTGCTTATACTCAGATTGAAGAAGTTTATACTTTTGAACCTGATTTAACAACTGACAAAATAACTCAAGAAGAATATAATAAACTTAAAGCTGCTGTTCAAGCTGGTAAAGTTATTGTTCTTAAGCAACAAGATATTCCTGGTGGATATGTTATGAGCATATCCATATTCATGGAGAATACTATTAATTTAATGTATAGTGCTGGCGATTCATTTACATTACTTAGTATTACTTCAGATTTAAATGTTACTGTTGAGACTCGATATTGTCTTTTGCCAAATAATACTAAAGAATATGAAGTAACTGGCAATTATAATCCTGCTCATAAGAAATACGTTGACGAAGCCGTTGTTGCTAATTCATATAAAGTTCTTCCTACTGAAGTTCTTGAAATTACTCAAGGTATGGCTTCCGATGATATTTTCAATAAGTTTGGTGGTAAATCCGCATATCTTGATTTTGTTAAGAATACTCCTGCTAATTCTATTATACGAGTTGAGGGTGGTGCTCTTTGTGTAGCAAGTATTATTACTTATACTGATGATAATACAAGTACTCTTGCTATTCAGACGCTTGGTTTAAATGCTTCACAATATATAGGAGTTACTGTTAGTAGCGGAACTGCTTCTGCTTTAACAGCTAAATATATTTTTGTAAATGAAAGTGATGTTCTTACCAAGACCAATACTTCTGCTTATACTCCGACTAAGGATTATCAGCCTTCAACAAAGAAGTATGTTGATACTGCTATCTATGGAAAAATAATTAATGCGGATAGTGGAACTATTTCCAGTGATTTAGTTGTCAATGGTACAAATTTAACGGGTATAGATGCAGAAGAGAGAGTTAAGAAGTATTTTGGTAATCTTGCTAATTTTAGAAATGTGGTTCAGGATATAATAGAAAATCATACAAGATATTTTATTCATAATGGCAATGATTGCAGAGAATTAGGTTGCTTAAATGTTTGGAAAAATACGGAAAACACTGAACATGAATTACATTTTATATTAACAGGATTTGGTGATGGAAATTTACATACAAAAAGGTATTCAATAAGAATCACTGAGAATACTGATGATGCAAAATTTATAATAGAAAATATCGTTAGTTCCGATAATCTCAGGACTGTTACTAAGAAAACTTCAACCGAATATTCTAACATTAATCCTAAATTAGATAATACTGCTTATCTTGTAACAGATGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bd230063a2c348d2edca1c17c03facc6ff3c177d67cf887a7deaf0cef7d35ca7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2880
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank