Protein

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Genbank accession
YP_012134668.1 [GenBank]
Protein name
receptor recognition protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MGFFAGKYSDGKTVLSLNTASGGDINAHKNPSTNTIFHSDMPFVLVESTYESALSSAGNGFYVCQMPSAIANLKSNDPGRVILTAIEVNGTHRGFLNGTQSQVGQFLSSTQADPQADPFRSFASLSQTAGFAFGNSLASGTYSYNSSLGHEESIARSGTGGTVLHSTYHGVVRPGGGAPVGATVAETFKQLGYPIGSTSVPISSGDTYYWDPNWMAPMGAGKRGHNWFYVCNSNIRGYAGYKQTIPSNIVQHFSDGGYRYVCRGSTTKLVSQSANTKIVQDGYGVTPTKVIWYVLNLRYSNGSMSVSSNPFTGSDIIISPSNFTIKGVKLSTTGWKFINQNALGNLSSRADMEYIGVNAAHGGVFGDTTGRCEFVCSNKGSIWAPVNYSGTRAQLSIYKFSASKTWYVNSNNNTIGNENGVVWGPSSIPLRLLSGNVASAYIGNDITPTYPGTGNVYKSLATVGLGLPNNNSTVILTSEILSGNLNVAGLPVNTWNGSVFQVQGRKSQSYTGGDAIFHQILVLPPGKLVPFHTTSAYKYTPDSGAFSRNSFIYTIKNLGNGNAELGVILHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:590 AA
molecular weight: 62756,42020 Da
isoelectric point:9,32640
aromaticity:0,10678
hydropathy:-0,14492

Domains

Domains [InterPro]
IPR059609
RBD
1–590
IPR059609
YP_012134668.1
1 590
Architecture
RBD
RBD 1-590
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012134668.1
1 590
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,0014
Central domain 157 355 200 0,2228
C-terminal 356 590 234 0,9766
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-355
C-terminal
356-590

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage BB1
[NCBI] 		2747781 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus BB1
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012134668.1 [NCBI]
Genbank nucleotide accession
NC_106597 [NCBI]
CDS location
range 74556 -> 76328
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGTGATGGTAAAACTGTATTATCACTAAATACTGCTAGTGGTGGAGATATTAATGCTCATAAAAACCCTAGTACTAATACTATTTTTCATTCTGATATGCCCTTCGTATTAGTAGAAAGCACTTATGAGAGCGCATTAAGTAGTGCTGGGAATGGTTTCTATGTATGCCAGATGCCTTCTGCAATAGCTAACTTAAAGAGTAATGATCCTGGTAGAGTTATACTAACAGCTATAGAAGTTAATGGTACCCATCGTGGTTTTTTGAATGGTACTCAATCTCAAGTTGGGCAGTTTCTTTCTTCTACTCAGGCCGATCCTCAGGCCGATCCTTTTAGATCATTTGCTAGCTTAAGTCAAACTGCTGGATTTGCTTTTGGTAATAGTCTAGCTTCAGGTACTTATTCCTATAATAGTTCTCTAGGGCATGAAGAATCTATAGCTAGAAGTGGTACTGGCGGTACTGTACTACATAGTACTTATCATGGTGTTGTAAGACCAGGTGGTGGTGCACCTGTAGGTGCTACTGTAGCTGAAACTTTCAAACAACTAGGGTATCCTATAGGAAGTACTTCTGTTCCTATATCTTCAGGTGATACGTACTATTGGGATCCTAACTGGATGGCTCCAATGGGGGCTGGTAAACGTGGGCACAACTGGTTTTATGTATGTAATTCTAATATTAGGGGGTATGCTGGATACAAACAAACAATCCCTAGCAATATAGTACAGCACTTTAGTGATGGTGGGTATAGATATGTTTGTAGAGGTTCTACTACTAAGTTAGTAAGTCAATCAGCTAATACAAAAATAGTTCAAGATGGTTATGGAGTAACCCCTACAAAAGTTATATGGTATGTGCTGAACCTAAGGTATTCTAATGGTAGTATGTCTGTTTCTAGCAATCCCTTTACAGGTTCTGACATAATAATTTCTCCGTCCAACTTTACTATTAAGGGAGTTAAGTTATCTACTACTGGTTGGAAGTTTATTAATCAGAATGCTCTAGGGAATCTAAGTTCTCGTGCTGATATGGAGTATATTGGAGTAAACGCTGCGCATGGTGGGGTGTTTGGGGATACTACTGGAAGATGTGAATTTGTATGCTCTAACAAAGGATCTATATGGGCACCAGTCAACTATAGTGGTACAAGAGCACAACTTAGTATTTATAAGTTCTCTGCTAGTAAGACCTGGTATGTAAACTCTAATAATAATACTATTGGTAATGAGAATGGTGTTGTCTGGGGACCTTCATCAATACCTTTACGCCTATTATCCGGTAATGTGGCTAGTGCCTATATTGGTAATGATATTACTCCGACCTATCCGGGCACTGGTAATGTTTATAAATCACTAGCAACAGTTGGACTAGGCCTACCAAATAATAACTCTACTGTTATACTAACTAGTGAAATATTATCGGGTAACCTTAATGTTGCTGGGTTACCAGTAAATACGTGGAATGGTAGTGTTTTTCAGGTGCAAGGAAGAAAATCACAAAGTTATACGGGAGGGGATGCTATATTTCACCAAATTTTAGTTCTTCCTCCTGGAAAATTAGTGCCTTTCCATACTACTTCTGCTTATAAATATACTCCAGATAGCGGAGCTTTTAGTAGAAACAGTTTTATATATACAATAAAAAATCTTGGTAATGGTAATGCAGAATTAGGTGTTATACTACACGTTAGTTTAGGTTCTGCAGTTTTCTTACCGAGACTACGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ae9c00434839a4f7c8608cf98fb0f342d998896946e0a45d54068218e9c9c3c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2724
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequencing coliphages Kelly,A. 2013-12-30 — GenBank