Protein

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Genbank accession
YP_010081296.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,88
Protein sequence
MNKAYTWNEKTGLDFCKELPQWNLLTRSNLRFLTGDTSEEPDKFDVGFYNKLNDLSEVDRTSQFPSDWHRPYSLGIRLYNPKNASGTWGWTYWTHWEKLPVKPNLTQGKKMGVSMRLANFGRKPLDFNLKLLYGNTSASVGTYKVEPWQYVFVSELVTLQTTETAKNLGLTVELDSTGQEEQIGLFFPKIEMDKVTPYVTTEEEYNYFKIQDMADSRPVYTGYSDSDSNDFRDYVWGGQLNDENYELFGGDTKQNAVWCYCRPLNQRVLIGIDSDIYTNASGRTVNFHVLNGSKSVFDMTGNTLYPEQFQDDRQAFDGVGNDWATIQEPLYVVDQNTAIDPVAGEMANVCIEGYHYKQASQGYRVDEIPRSAILNVGYSLGSYYVNEDSVKEVDVMRNRVGITPPQVFGEPSYSSMNDWMTTYGLPNGLIMRPWRVRMVDTETNLTKIKGISIGWNVSLFQKYLATDHVTEDWFRDYDNKRTKAIPDRVLFINDKAKRAWLYKFNPTKSAWERSVEYTIPAVNTALLKAWTIVPKDGAMNGHIIFTDKTNVEMLQNIRPNWLDYDEFTPKVQYNEVKYNPQMFTNLYNTRYQWWGIKDENPQNQSYGPCVPYEMDFMTGLCKLERIYE
Physico‐chemical
properties
protein length:628 AA
molecular weight: 72829,85030 Da
isoelectric point:5,09842
aromaticity:0,13694
hydropathy:-0,61433

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010081296.1
1 628
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,3794
Central domain 20 492 474 0,7555
C-terminal 493 628 135 0,1714
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-19
Central
20-492
C-terminal
493-628

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage CHPC1020
[NCBI] 		2675237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010081296.1 [NCBI]
Genbank nucleotide accession
NC_055011 [NCBI]
CDS location
range 17621 -> 19507
strand +
CDS
TTGAATAAAGCATATACTTGGAACGAAAAGACAGGGCTAGACTTTTGCAAGGAGTTGCCACAATGGAACTTGTTGACACGTTCAAACCTTAGATTTTTAACAGGGGACACTTCAGAAGAACCTGACAAATTTGACGTTGGTTTTTACAACAAACTAAACGATTTAAGTGAAGTAGACAGAACTAGCCAGTTCCCTAGTGATTGGCATAGACCTTATAGCTTAGGAATTAGACTTTACAACCCTAAAAACGCTAGTGGAACATGGGGGTGGACTTATTGGACACATTGGGAAAAATTACCAGTTAAGCCTAACCTCACACAAGGCAAAAAAATGGGTGTATCAATGCGTTTAGCTAACTTTGGTAGAAAACCATTAGACTTTAATTTAAAACTATTATACGGTAATACTTCGGCTTCTGTGGGTACTTATAAAGTTGAGCCGTGGCAATACGTTTTTGTTAGTGAGTTAGTTACGCTACAAACTACGGAAACGGCTAAAAACTTAGGCTTGACTGTTGAACTTGACAGTACAGGACAAGAAGAACAAATCGGCTTGTTTTTCCCTAAGATTGAAATGGACAAGGTAACACCATACGTTACAACAGAAGAAGAATATAACTATTTTAAGATCCAAGACATGGCAGATTCACGACCTGTTTACACAGGGTATTCTGATTCAGATAGTAACGATTTTAGAGATTACGTTTGGGGTGGACAACTGAACGATGAAAATTATGAACTGTTCGGAGGAGATACAAAACAGAATGCCGTATGGTGCTATTGTCGTCCTCTTAATCAACGTGTATTAATTGGAATTGATTCTGATATATACACTAACGCAAGTGGTAGAACAGTTAATTTTCACGTTTTAAACGGTTCTAAGAGCGTGTTTGACATGACAGGGAACACTTTATATCCTGAACAATTTCAAGACGACAGACAAGCGTTTGACGGAGTGGGGAACGATTGGGCAACCATACAAGAACCGTTGTACGTAGTGGACCAAAACACAGCGATTGACCCAGTAGCAGGAGAAATGGCGAACGTATGTATAGAGGGTTACCACTATAAACAAGCAAGTCAAGGTTATAGAGTTGATGAAATACCACGTTCAGCAATTTTAAACGTTGGTTACTCTTTAGGTTCTTACTACGTGAATGAAGATTCTGTAAAAGAAGTTGACGTAATGCGTAACAGGGTTGGTATAACACCTCCGCAAGTGTTTGGAGAACCAAGTTATAGCAGTATGAACGACTGGATGACTACATACGGACTACCAAACGGACTAATCATGCGACCTTGGAGGGTTAGAATGGTAGATACAGAAACGAACTTGACTAAAATCAAGGGTATTTCAATCGGTTGGAATGTTTCTCTGTTCCAAAAATATCTAGCAACAGACCACGTGACAGAGGACTGGTTCAGAGATTATGACAACAAACGAACTAAAGCGATTCCTGACCGTGTTTTATTCATCAATGACAAAGCTAAAAGGGCATGGCTTTATAAGTTTAACCCTACCAAGTCAGCATGGGAACGTTCGGTAGAATACACCATACCAGCAGTCAACACAGCACTCTTAAAGGCTTGGACTATCGTACCAAAAGACGGTGCTATGAACGGTCATATCATTTTTACGGACAAAACTAACGTTGAAATGCTTCAAAACATTCGCCCTAACTGGTTAGATTATGACGAGTTCACACCTAAAGTTCAGTACAACGAAGTCAAATATAACCCTCAAATGTTCACTAACTTGTACAATACAAGGTATCAATGGTGGGGAATTAAAGACGAAAACCCACAAAATCAGTCTTACGGTCCTTGTGTTCCTTATGAAATGGACTTTATGACAGGACTATGCAAATTAGAAAGGATATACGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
37e26647ae54be6f5bdc94b6e4fa539fdfbb2c58fd44355849256442fe67dec2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3533
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank