Protein

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Genbank accession
YP_007517884.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRLRLIRLIKDNLLLAFLVCFLFTTSTNAGTLNYKTYAITTYAPSLEFPFYDNSTGYNTDGSNSSPYGLGSVLSTGTISSPSGYYWGSGQVLDSGRSEYVAVEVTGYITWPGTTGQETTVYFGVAADDGVFMNIDGTNVITDWQQQGWGYWNATGSLTKTAGQQYEITVWMYEWGGAAALDINYCMTNSYSTSCQTDLPTSWFSTTQVIPTSGITNAQTTEFNTFRNKSVSGNQIYVTQTGDGNTLNILQDGDDNLIIGTNLTSAAVINGDNNATDIDQLGNDNVLGLDITGSSNNVAVTQNQDQRAKLSITGSSNNVDLDQSAINYVGEHYMSVTIAGNSNNVDVDQTETGNKKLFLDIDGSNNVAVDQKGTGNHYAEITLTDSHNVDVTQDGSGDHNATINLSGNTSTLTLTQDSSTDQNYYLYQNCTQTSCSATVTQN
Physico‐chemical
properties
protein length:441 AA
molecular weight: 47533,95950 Da
isoelectric point:4,05003
aromaticity:0,09524
hydropathy:-0,37007

Domains

Domains [InterPro]
IPR037524
RBD
52–198
IPR037524 DC_1630
G3DSA:3.90.182.10
STR
72–257
G3DSA:3.90.182.10
IPR011658
RBD
83–178
IPR011658
YP_007517884.1
1 441
Architecture
RBD
STR
RBD 52-71 | STR 72-441
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007517884.1
1 441
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0018
Central domain 11 430 421 0,7137
C-terminal 431 441 10 0,4780
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-430
C-terminal
431-441

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC008M
[NCBI] 		1283076 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter ubique HTCC1062
[NCBI] 		335992 Bacteria > Proteobacteria > Alphaproteobacteria > Pelagibacterales > Pelagibacteraceae > Candidatus Pelagibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007517884.1 [NCBI]
Genbank nucleotide accession
NC_020484 [NCBI]
CDS location
range 10638 -> 11963
strand +
CDS
ATGCGATTACGATTAATCAGACTAATTAAAGATAATTTATTACTGGCATTTTTAGTATGTTTCTTGTTTACAACTTCAACAAATGCAGGAACTTTAAATTATAAAACATATGCTATAACTACCTATGCACCAAGCCTAGAATTTCCTTTCTATGATAATTCAACAGGTTATAACACAGATGGTTCAAATTCCAGTCCATATGGTTTAGGTAGTGTACTCAGCACAGGAACTATATCAAGTCCAAGTGGATATTATTGGGGTAGTGGTCAGGTATTAGATAGTGGAAGAAGTGAATATGTGGCAGTAGAAGTCACAGGTTACATCACTTGGCCAGGTACAACAGGACAAGAAACAACAGTTTACTTTGGCGTAGCGGCTGATGATGGTGTGTTTATGAACATAGATGGTACAAATGTTATTACAGATTGGCAACAACAAGGTTGGGGGTATTGGAACGCAACTGGTTCATTAACAAAGACTGCTGGCCAACAATATGAAATTACAGTATGGATGTATGAATGGGGTGGCGCAGCTGCTTTAGATATTAATTACTGTATGACTAACTCTTATTCAACTTCTTGTCAAACAGATTTGCCAACTTCGTGGTTTTCAACAACACAAGTTATACCAACCTCAGGCATAACAAATGCACAAACAACAGAATTTAATACATTTAGAAATAAATCTGTAAGTGGTAATCAAATTTATGTTACACAAACAGGTGATGGCAATACTTTAAATATTCTACAAGATGGTGACGATAACTTAATTATTGGTACAAACTTAACATCAGCTGCTGTGATAAATGGTGATAACAATGCTACAGACATAGACCAACTTGGTAACGATAATGTTTTAGGTTTAGATATAACAGGTTCATCAAACAATGTGGCAGTTACACAAAACCAAGACCAAAGGGCAAAGTTATCTATAACAGGTTCATCAAACAATGTAGATTTAGACCAGTCAGCAATTAACTATGTTGGTGAGCATTATATGTCAGTCACTATAGCAGGTAATAGTAATAATGTTGATGTAGACCAAACAGAAACAGGAAATAAGAAATTGTTTTTAGATATAGACGGTAGTAATAATGTTGCAGTAGACCAAAAAGGTACAGGCAATCACTATGCAGAAATAACATTGACTGATAGTCATAATGTAGATGTAACGCAAGACGGAAGTGGCGACCACAATGCCACTATTAATTTAAGTGGTAATACTTCTACTCTTACTTTGACACAGGATAGTTCAACAGACCAAAATTATTACTTATATCAAAATTGTACACAAACAAGTTGCTCAGCAACAGTCACACAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dca1f43367f2999bc1e338ce86dae9ee6a324a0547622cce6a8cdc02e7c1a4a1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7745
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50