Protein

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Genbank accession
AGH57622.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,66
Protein sequence
MGMNIWDSRKTNSTIVIEDGGTTLLSADKDSLVVSNEEDQLVVADPKCTEVVSLGDGQYLRGPKGDKGDTPDHEWVDTSLRFRRPDGSWGWLVDLQGEKGDKGDQGIQGPAGIGVEGPQGNDGITRYAWVKYADTTTPAPEEMFQSPDGRIYFGIAYNKLLDEGEGDPLEFDHTQYKWSKILGEDGIPGTPGNTGPVGPAGVGFTWIGEFPQHPTELDIGRPIEDGDTYFNTSDNKVYTYAGGWHTMLESGGEGPIGPQGSPGGGFQYQGEFTSSPSGALVNWLYKNINNDLFYMYDGTSWILATSDGKDSPDGAPAGNGLSFFTTYHDSVTQPARPTLDGDTNGWNPNAHTFDPGTIKWVSQKIATEPELGAWNDPIDISTHEYRGPVGFRGSQSIMIPIPGWNGNWDDALAATAVSGAAPQEWDVVTMYKSEDPALQETRRWAYNPQNGIWEWLAYNYVFLGDVLVDGTLDAQKVNVNSTLTVGTGDNVAKVSGEDTIRIAAGNADKSLAPFRVYQDGSIVAENATIEGTVVATSGSFTGDVFAESLTLSGAGTQIQSAVYTPGDVGWSINNDGTAEFNDVTVRGTGYFTDGIFDGTVYAENLEGGVTSTYIKAQNRFTSVVNSGTWLDVSEISILNTYTFDRYLSIEDAIGGVIRIQVQSGASGGTNYEWRLYSPSLNKTYATLSSTATFPSGTPPLRVTISVAKINISIPANETPGDIILQWRSTSANNLTVYSNRTFEGDLDDNNLFILLKDSTEMA
Physico‐chemical
properties
protein length:762 AA
molecular weight: 82186,05890 Da
isoelectric point:4,26676
aromaticity:0,10367
hydropathy:-0,41522

Domains

Domains [InterPro]
DC_1333
STR
3–750
DC_1333
IPR015406
RBD
500–594
IPR015406
AGH57622.1
1 762
Architecture
STR
STR 3-750 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage pYD6-A
[NCBI] 		754052 Uroviricota > Caudoviricetes > Schitoviridae > Matsuvirus > Matsuvirus pYD6A
Host Pseudoalteromonas sp. YD6
[NCBI] 		728062 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Pseudoalteromonadaceae > Pseudoalteromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH57622.1 [NCBI]
Genbank nucleotide accession
JF974296.1 [NCBI]
CDS location
range 63966 -> 66254
strand -
CDS
ATGGGCATGAATATTTGGGATTCTCGTAAGACGAATTCAACAATTGTAATAGAAGACGGAGGAACTACGTTACTGTCTGCTGATAAAGATTCTTTGGTAGTTAGTAATGAAGAAGACCAATTAGTAGTAGCTGACCCTAAATGTACAGAAGTAGTTTCTTTAGGGGATGGTCAATATCTTAGAGGGCCTAAAGGAGACAAGGGTGATACTCCAGATCATGAATGGGTAGATACCTCCCTTAGATTTAGACGTCCTGATGGTTCATGGGGATGGTTAGTAGATCTTCAAGGGGAAAAGGGTGATAAAGGGGATCAAGGTATACAAGGCCCTGCGGGTATAGGCGTAGAAGGTCCACAAGGTAATGACGGTATTACTAGATATGCTTGGGTTAAATATGCAGATACTACTACCCCAGCACCAGAAGAGATGTTTCAATCTCCTGATGGAAGAATCTATTTTGGTATTGCTTATAATAAATTACTGGATGAAGGGGAAGGAGATCCTTTAGAGTTTGATCATACCCAGTACAAATGGTCTAAGATTCTAGGTGAAGACGGTATTCCGGGAACACCCGGTAATACAGGTCCTGTAGGTCCAGCAGGTGTAGGGTTTACTTGGATAGGTGAATTTCCTCAACATCCTACTGAATTAGACATTGGTCGTCCTATAGAGGATGGAGATACTTATTTTAATACTTCAGATAATAAAGTATACACATATGCTGGTGGTTGGCATACGATGTTAGAATCTGGTGGTGAAGGTCCAATAGGACCTCAAGGCTCTCCGGGAGGAGGTTTCCAGTACCAAGGAGAATTTACTAGCTCCCCTTCAGGTGCATTAGTTAACTGGCTATATAAGAATATTAATAATGATCTATTCTATATGTATGATGGTACATCGTGGATATTAGCTACTTCAGATGGTAAAGATAGTCCTGATGGTGCACCTGCTGGTAATGGTCTTAGTTTCTTTACTACTTATCACGATAGCGTTACTCAACCAGCAAGACCTACTTTAGATGGTGATACTAATGGATGGAATCCTAATGCACACACCTTTGATCCGGGTACTATTAAATGGGTGTCTCAGAAGATTGCTACTGAACCTGAATTAGGTGCTTGGAATGACCCGATAGATATATCTACACATGAGTATAGGGGTCCTGTTGGTTTCCGAGGCTCTCAATCTATTATGATTCCTATTCCGGGATGGAATGGTAACTGGGATGATGCTCTAGCCGCTACTGCTGTATCTGGTGCTGCTCCTCAAGAATGGGACGTAGTAACTATGTATAAGTCAGAAGACCCCGCTCTTCAAGAGACGCGTAGATGGGCATATAACCCTCAGAATGGTATATGGGAATGGTTAGCCTATAACTATGTTTTCTTAGGTGATGTGTTAGTTGATGGTACTTTGGATGCACAGAAAGTTAATGTAAATTCTACCCTTACTGTCGGTACTGGTGATAATGTGGCTAAAGTGTCAGGTGAAGATACTATTCGTATAGCAGCAGGTAATGCAGATAAATCTTTAGCTCCTTTTAGAGTGTATCAAGACGGATCTATAGTAGCAGAAAATGCAACAATAGAAGGTACTGTAGTAGCTACTTCTGGTTCTTTTACTGGAGATGTTTTTGCTGAGTCGCTAACACTTTCAGGTGCAGGTACACAAATACAATCTGCTGTATATACTCCGGGAGATGTAGGATGGAGTATTAATAACGATGGTACAGCTGAATTTAATGACGTAACTGTTCGAGGTACAGGATACTTCACTGATGGGATATTCGATGGTACGGTGTATGCTGAAAACTTAGAAGGAGGTGTAACTTCTACTTATATTAAAGCACAGAATAGATTTACATCTGTTGTTAACTCAGGTACTTGGTTAGATGTATCTGAAATTAGTATTTTAAATACTTATACGTTTGATAGATATTTATCTATAGAAGATGCTATAGGAGGGGTTATTAGAATTCAAGTACAGAGCGGAGCCTCTGGAGGTACTAACTACGAATGGAGATTATATTCTCCGAGTTTAAATAAGACTTATGCTACTTTAAGCAGTACAGCAACATTTCCATCAGGAACTCCACCACTACGAGTTACAATAAGTGTTGCTAAAATAAATATATCTATTCCTGCGAATGAAACTCCGGGGGATATAATCTTGCAATGGAGAAGTACTTCTGCAAATAATTTAACGGTGTATAGTAATAGAACGTTTGAGGGGGATTTAGATGATAATAATCTGTTTATTCTTTTAAAAGATAGTACAGAGATGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
79a999d427a35f8ab4c7f8f2cabb12e10b39799ab1604cbc065de565244b4247
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6883
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Pseudoalteromonas phage pYD6-A Henn,M.R., Wolf,A., Jost,G., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank