Protein

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Genbank accession
YP_009841464.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 0,75
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,95
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MALRIDKINLKATDVAALPVYGLITTGTNLNTLDGSVYGKYWQSENANSPTSLNYPVAAAGTLLVLKNNASNLATSCTQIYLPYNSNEIYSRSFYSSWTAWSRFASIDMDGANSTIKSLTGLTTALSIEQGGTGVVSKEAFRQSYNVPTKDESLLTENNLSDLADRAAAWLNVRPIGSTPLAGDPVNDYDAVTKRWVENKINTGTVGPTMNGVMNYGVGDFHLRDSRAYIQPYEVVSDGQLLNRADWPELWAYAQMLTPISDAEWLADASKRGKYSLGNGTTTFRVPDRNGVQTGSIQALFGRGDGGNSSSNGVVSESGAPNITYAAPHTMVTLASLASQVATNGAFQSITSGDAPAAVGSGSRYIQTNFDASRCSPVYGRSAAEIVPRNFVGVWVIRASGGFVAANTSWSVMNADAVRPGSGVKALSGQVKAQYKIGTVVEADAGLRCDAYMDGLYYAILSVYNKTKGVTKDLAFDDTGTLSSDRYRARYGTMMAWSETGFTKGTFSAEDQAIGANYAFNSLLSGAQSSQGGYKTSCHWGMIHHNGTSFAQSVWHIAGDANNAYGVRVGIQPLNSDIFFHKWQPGSEETYTLQKNATSDRRLKHSIENTTVEKALENIKNLNFVTFIYNNDNLQRIRRGVIAQETEVIEPLYVKTRKFYDNNGAEQEQKELDTTPMLLDTMHVVQDLIKRIEDLEEELKQLKVQIVPQ
Physico‐chemical
properties
protein length:709 AA
molecular weight: 77174,14990 Da
isoelectric point:5,83449
aromaticity:0,09309
hydropathy:-0,32496

Domains

Domains [InterPro]
cd19958
STR
22–105
cd19958 DC_1651 Coil
cd19958
STR
25–105
cd19958 SSF88874 IPR030392
IPR030392
CHP
599–649
IPR030392
DC_0409
RBD
630–709
DC_0409
YP_009841464.1
1 709
Architecture
STR
STR
RBD
STR 22-105 | STR 144-650 | RBD 651-709
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009841464.1
1 709
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,6357
Central domain 148 346 200 0,0490
C-terminal 347 709 362 0,9077
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-346
C-terminal
347-709

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage fp01
[NCBI] 		2315695 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus fp01
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009841464.1 [NCBI]
Genbank nucleotide accession
NC_048731.1 [NCBI]
CDS location
range 56775 -> 58904
strand -
CDS
ATGGCTCTTAGAATTGATAAAATTAACTTAAAGGCTACTGATGTAGCCGCTTTACCTGTATATGGTTTAATTACTACAGGAACAAATTTAAATACACTTGATGGGAGTGTGTATGGAAAGTATTGGCAATCTGAAAATGCTAACTCTCCTACTTCTCTTAACTATCCTGTTGCGGCTGCAGGTACATTACTAGTTTTAAAAAATAATGCAAGCAATTTAGCAACTTCTTGTACTCAAATTTACTTACCTTATAATAGTAATGAGATATATAGTAGATCTTTTTACAGTTCATGGACTGCATGGTCAAGATTTGCTAGTATAGACATGGATGGTGCCAACTCAACTATTAAATCTTTAACAGGTTTAACCACTGCACTTTCTATAGAACAAGGGGGTACTGGAGTAGTATCAAAAGAAGCTTTTAGACAAAGTTATAATGTGCCAACAAAAGACGAAAGCCTATTGACTGAAAATAATTTATCAGATTTAGCAGATCGCGCAGCTGCGTGGTTAAATGTTCGTCCTATTGGATCTACCCCCCTTGCGGGAGACCCCGTTAATGATTATGATGCTGTAACTAAGCGTTGGGTGGAGAACAAAATTAATACTGGCACAGTAGGACCCACAATGAATGGCGTGATGAACTACGGTGTCGGTGATTTCCATCTTCGAGATAGCCGTGCGTATATTCAACCGTATGAGGTGGTTTCTGATGGGCAGCTTCTTAACAGGGCTGACTGGCCTGAGCTTTGGGCATATGCGCAAATGCTTACGCCGATTTCAGATGCGGAATGGCTTGCTGACGCATCAAAGCGTGGTAAATATTCTTTGGGTAACGGAACAACAACGTTTCGAGTGCCTGACAGGAACGGTGTTCAAACTGGTTCCATACAGGCCTTATTTGGCAGGGGTGACGGCGGGAATTCATCGTCCAACGGGGTTGTGTCTGAATCAGGCGCTCCAAATATAACTTACGCAGCGCCGCACACAATGGTGACATTGGCTTCTTTAGCAAGCCAAGTGGCAACTAACGGTGCTTTTCAGTCGATAACTTCGGGGGACGCTCCTGCTGCGGTTGGCTCTGGTTCAAGGTACATACAAACCAACTTTGACGCTTCTCGCTGCAGTCCTGTTTATGGTCGTTCAGCAGCAGAAATCGTTCCGCGCAACTTTGTCGGCGTTTGGGTGATTCGTGCCTCTGGTGGCTTTGTTGCCGCGAATACGTCTTGGAGTGTAATGAATGCTGATGCTGTCCGCCCAGGCTCTGGCGTAAAGGCATTGTCAGGACAGGTAAAGGCCCAATACAAAATCGGCACCGTTGTTGAAGCGGATGCAGGATTGCGATGCGATGCATACATGGATGGCCTTTATTATGCGATTCTGTCTGTATACAACAAGACAAAAGGGGTGACAAAAGACCTTGCCTTTGATGACACAGGTACGCTGAGTAGCGATCGATATAGAGCAAGATATGGGACTATGATGGCTTGGAGTGAAACAGGTTTTACTAAAGGTACATTTAGCGCGGAAGACCAGGCTATTGGAGCAAATTACGCTTTTAATAGTCTTCTTAGTGGTGCCCAATCTAGTCAAGGTGGTTATAAGACTTCGTGTCACTGGGGGATGATTCATCACAACGGAACATCTTTTGCACAATCCGTATGGCATATTGCTGGCGATGCTAATAACGCTTATGGAGTTCGTGTCGGTATTCAACCATTAAATTCCGATATTTTTTTCCACAAATGGCAACCAGGATCAGAAGAAACATACACTTTACAAAAGAATGCAACTTCAGATAGGCGCCTTAAACATTCTATAGAAAATACAACTGTTGAAAAAGCTTTAGAAAACATCAAAAATCTAAACTTTGTGACATTCATATATAATAACGATAATCTTCAACGTATAAGACGAGGTGTTATCGCTCAGGAAACAGAAGTTATAGAACCGCTTTATGTTAAAACTAGAAAATTCTATGATAACAATGGGGCAGAACAGGAACAAAAAGAACTTGATACAACTCCAATGCTTCTTGATACTATGCATGTTGTTCAAGATCTTATTAAAAGGATTGAAGACTTAGAAGAAGAACTCAAGCAATTAAAGGTACAGATAGTACCTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a4406e827b7012c0c3f7ec668df0136df7c9c86c6399b7682984e9395191dd24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6808
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of a polyvalent bacteriophage fp01 Vasquez,J.I., Robeson,J. and Santander,J. 2019-07-12 — GenBank