Protein

View in Explore
Genbank accession
YP_009195085.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,68
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MADLKAGTTVGGNTIWSQANLPLLPSGNTITYKGFKIYTENDKPTKAEIGLGNVTNDAQVKKAGDDMTGNLTLTNNASLTLPRRINFVSDNSSAVYTVATRSDNNAVTDPFPSSETRVYSLLVNTKSHTSDPAGGATLAAHLFNQKASGAGSMFIQVFGPPNKTTGASGSVTGQLLMNGENGQLQMTGSGLTIGMQTVVSGTIFGTQMSIKGDSNRNLFFQDAGGNELSLIYADTGKNLYVRTGGGAYATRFASDGTLVLANHLTVPGQATFNGLGVFNNRASVGVDYDSQGTNSAILRVDTSGDGNGVGDGVTHLGYKDGNGRYNHYFRGTGSVYLTNKLGTIFTSQSYYNDVPQGTPAQYFLPTVGQGAKNYLRQFRGGNADTIWHETVQGGTYRLATGSTDAQEEFQITSAGNIRARVEVQSASCGSGGQFRAVQGNFGVMHRNDGGNYYTLITNSGDPWGTWNGLRPFTINLTTGIVSMSSGVNISGGFNISGAAEFNNGLGCGTANGLGANAISLGDTDTGFVQEGDGILNAYANSQRIMRWTTGATANYKQLQVQGVNGPALLLNNTATNQSCYLLITLAGNNGAYFGFGGAGDEVSVHNYRLNTTLQLRTSDLYMNRGLYVEGNVNANDVYIRSDIRLKSNLVELKDSLSKIEQLKGYIYDKQSKDADDIVYHRESGLIAQDVEKVLPEAVREDIDTGMLTISPSGINALLVNAINELRERMEAIENKLGA
Physico‐chemical
properties
protein length:738 AA
molecular weight: 78338,83370 Da
isoelectric point:5,69319
aromaticity:0,08130
hydropathy:-0,31247

Domains

Domains [InterPro]
DC_1159
STR
1–390
DC_1159 IPR048390 G3DSA:6.20.80.10 IPR051577
DC_1202
STR
338–738
DC_1202
IPR030392
CHP
641–736
IPR030392
IPR030392
CHP
641–699
IPR030392 Coil
YP_009195085.1
1 738
Architecture
STR
ATT
STR
STR 1-412 | ATT 413-474 | STR 475-738
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009195085.1
1 738
Domain Start End Length (AA) Confidence
N-terminal 1 466 466 0,1225
Central domain 467 665 200 0,1575
C-terminal 666 738 72 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-466
Central
467-665
C-terminal
666-738

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage Margaery
[NCBI] 		1701810 Uroviricota > Caudoviricetes > Pantevenvirales > Pseudotevenvirus > Pseudotevenvirus margaery
Host Citrobacter
[NCBI] 		544 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae >
Host Citrobacter sp.
[NCBI] 		1896336 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009195085.1 [NCBI]
Genbank nucleotide accession
NC_028755 [NCBI]
CDS location
range 171664 -> 173880
strand +
CDS
ATGGCAGATTTAAAAGCGGGTACTACCGTTGGCGGTAATACTATCTGGAGTCAGGCGAATTTGCCTTTGCTCCCTTCTGGAAATACAATCACATATAAAGGCTTTAAAATCTACACCGAAAACGATAAGCCGACAAAGGCAGAAATCGGATTAGGCAACGTAACAAACGATGCACAGGTGAAGAAAGCTGGCGACGATATGACAGGCAACTTGACGTTAACGAACAATGCTTCATTAACTCTTCCTCGTCGCATTAACTTTGTTTCCGATAATTCATCGGCGGTGTATACTGTCGCAACGCGTTCAGATAACAACGCAGTTACAGATCCGTTTCCGTCATCGGAAACTCGCGTATACAGTTTATTAGTTAATACCAAATCGCATACAAGCGATCCTGCGGGTGGTGCTACTTTAGCCGCACATCTGTTTAACCAGAAAGCATCCGGTGCTGGTTCGATGTTTATACAGGTATTTGGCCCACCTAACAAGACAACAGGCGCTTCTGGTTCGGTGACCGGACAACTGTTGATGAACGGAGAAAATGGTCAACTGCAAATGACAGGTTCCGGTTTAACGATCGGGATGCAAACTGTTGTTAGTGGTACGATCTTTGGTACGCAAATGTCTATCAAGGGCGATTCGAACCGAAATCTGTTTTTCCAGGATGCTGGCGGTAATGAACTGAGTTTGATCTATGCTGATACAGGAAAGAACTTGTATGTTCGTACTGGTGGTGGTGCTTATGCAACTCGTTTTGCATCGGACGGAACTTTAGTTCTTGCTAACCATCTAACCGTTCCTGGACAGGCCACATTTAATGGTCTGGGTGTATTCAATAACCGTGCTTCTGTAGGCGTAGATTACGATTCACAAGGAACCAACTCAGCTATTCTTCGTGTTGATACAAGCGGTGATGGAAACGGGGTTGGTGATGGTGTTACCCACTTAGGCTATAAAGATGGTAACGGAAGATATAACCATTATTTCCGTGGTACTGGTTCAGTTTATCTGACCAATAAATTAGGCACTATCTTTACATCGCAATCATATTATAATGATGTTCCCCAGGGCACACCAGCGCAATATTTCTTACCTACTGTTGGTCAGGGTGCGAAAAACTATTTGCGTCAGTTCCGAGGCGGTAACGCGGACACAATCTGGCATGAAACTGTTCAGGGCGGTACATATCGTTTAGCAACGGGTAGCACTGATGCACAGGAAGAGTTTCAGATCACCAGTGCTGGTAATATCCGCGCCCGTGTAGAAGTACAAAGTGCTTCGTGTGGTTCTGGTGGTCAGTTCCGCGCAGTCCAGGGAAACTTTGGTGTAATGCACCGAAATGATGGTGGTAACTATTACACCTTGATCACAAACTCTGGCGATCCGTGGGGAACATGGAACGGCTTACGCCCGTTCACTATTAACTTAACTACTGGTATTGTATCAATGTCCAGCGGGGTTAATATCTCAGGCGGTTTCAACATTTCTGGTGCTGCTGAATTTAACAACGGGCTTGGTTGTGGTACTGCAAACGGATTGGGTGCAAACGCAATATCTCTTGGTGATACCGATACAGGGTTTGTTCAAGAAGGCGATGGTATTCTGAACGCATATGCAAACAGCCAGCGTATTATGCGTTGGACTACTGGTGCAACTGCTAACTATAAACAGTTACAGGTTCAGGGTGTTAACGGGCCAGCATTGCTTCTGAACAATACCGCTACTAACCAATCATGTTATTTGCTGATTACTTTGGCGGGTAACAACGGTGCATACTTCGGGTTCGGTGGTGCTGGCGATGAAGTATCGGTACACAACTACCGACTGAATACAACCTTACAATTACGTACTTCGGATCTGTATATGAACCGTGGTCTGTATGTTGAAGGTAACGTAAACGCCAACGATGTGTATATTCGTTCTGATATTCGACTGAAATCTAATTTGGTTGAATTGAAAGATTCATTAAGCAAGATTGAACAGCTTAAAGGTTATATCTACGATAAGCAATCAAAAGATGCTGATGATATCGTATATCATCGTGAATCCGGTCTGATCGCTCAGGATGTTGAGAAGGTATTACCGGAAGCAGTGCGCGAAGACATCGACACTGGTATGTTAACCATTTCACCTTCGGGAATTAACGCGCTTCTGGTTAACGCAATCAACGAACTGCGTGAACGTATGGAAGCAATCGAAAACAAATTAGGGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b8d91b0d9968c633285f06879455c0a201cb6d48e3cd793652b86b93094e99b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6181
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Complete Genome of Citrobacter freundii Myophage Margaery Yi,D., Cadungog,J.N., Cahill,J.L., Rasche,E.S. and Everett,G.F.K. 2015-02-26 — GenBank