Protein

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Genbank accession
XYH45576.1 [GenBank]
Protein name
tail fiber assembly protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MADYLSINEFPGDGTIMQIEVQFAGNNPDVGSGAVPYFKPEDVKAQFFTPATDTTPQIVEDKPLGYVGPNTFITLEPVPTGKILRVYRETEDRFSLVNFVALQNVTERDLDALARQTVFLVEEAKDAAQFAIDTAREAIKYATSSTVIANEALVLATAADVASKAAVQASALATGTANDAKAIAIEAAADAAAAEEHATNVEVLAADAQTKADTALATANRAETKGDQAISTANAIDGKAQTAINTANQATATANAAKSTAEAIDGKASQAIATANSANATAAEAKATAEAIDAKATDALSTADSASDAAMAATTTANQAKATAESANANVAGKVNKAGDTMTGQLLGPAFQTTGVGASTSGPRFEMHWPGQSAGMMYLNSSGQITWGQTGGSGISANDYTHINMSDGYFLHRRAGRFMGTLTVDGGLYSNQWNPQSGTTLIANGILNVNNSIIEKTGVARLRAPNGANSHLFFENADASERVLVYADTAHNLNIRTSAGPTLATFRNADKGLTITGGIGCTGLTSSARVQGSDLLSTGVVYAGSGAAYLNTDGNVYGGTWGGWLSNWVNSNFITRGEVAPNIRANVASWTAGQVGTYALLQNRGSPGDPDAILGGDQLAWASCAGDFNAIVGYGQWRLMGQVRASNKVTVTSVWLRIA
Physico‐chemical
properties
protein length:659 AA
molecular weight: 68053,48130 Da
isoelectric point:4,84805
aromaticity:0,06677
hydropathy:-0,11942

Domains

Domains [InterPro]
DC_1263
ATT
1–248
DC_1263 DC_1834 G3DSA:6.20.70.20
DC_0749
RBD
366–644
DC_0749
XYH45576.1
1 659
Architecture
ATT
STR
RBD
ATT 1-248 | STR 272-401 | RBD 402-644 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH45576.1
1 659
Domain Start End Length (AA) Confidence
N-terminal 1 239 239 0,9779
Central domain 240 438 200 0,3829
C-terminal 439 659 220 0,8748
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-239
Central
240-438
C-terminal
439-659

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Scalae
[NCBI] 		3395523 Viruses >
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH45576.1 [NCBI]
Genbank nucleotide accession
PV037724 [NCBI]
CDS location
range 21744 -> 23723
strand +
CDS
ATGGCAGACTACTTGTCTATCAACGAATTCCCCGGCGACGGCACCATCATGCAAATCGAGGTTCAGTTCGCTGGTAACAACCCCGATGTAGGTTCTGGTGCTGTACCGTATTTCAAACCGGAAGACGTGAAGGCTCAATTCTTCACTCCGGCTACCGACACCACTCCGCAGATCGTGGAGGACAAGCCTCTCGGCTATGTCGGCCCTAACACTTTCATCACGCTGGAGCCTGTGCCTACCGGCAAGATCCTGCGTGTGTATCGCGAAACCGAGGATCGTTTCTCGCTGGTCAACTTCGTTGCCTTGCAGAACGTGACCGAGCGCGACCTTGACGCTCTGGCTCGCCAGACGGTCTTCCTCGTTGAAGAAGCCAAGGACGCCGCGCAGTTCGCAATCGACACTGCCCGCGAAGCTATCAAGTATGCCACGTCGTCTACAGTGATCGCTAACGAAGCACTCGTACTGGCCACTGCGGCGGACGTTGCTTCGAAAGCTGCGGTACAAGCTTCCGCTCTGGCAACTGGCACTGCCAACGACGCCAAGGCAATCGCCATCGAGGCGGCAGCCGACGCTGCCGCTGCTGAGGAACATGCCACTAACGTGGAAGTTCTGGCAGCCGACGCACAGACCAAAGCCGACACGGCACTCGCTACAGCGAACCGCGCCGAGACTAAGGGCGACCAAGCGATCAGCACAGCCAACGCCATTGACGGTAAGGCACAGACCGCGATCAACACCGCCAACCAAGCTACTGCGACAGCCAACGCGGCTAAGTCCACTGCTGAGGCAATTGATGGGAAGGCTTCTCAGGCTATCGCTACGGCGAACTCCGCCAACGCTACTGCGGCAGAGGCCAAGGCAACCGCCGAGGCAATCGACGCAAAGGCAACTGATGCGCTCTCGACAGCGGACAGCGCAAGTGACGCGGCCATGGCGGCAACGACTACGGCGAACCAAGCTAAGGCTACCGCCGAGTCTGCAAACGCTAACGTGGCAGGTAAGGTGAACAAAGCTGGAGACACGATGACTGGGCAGCTCCTTGGCCCGGCGTTCCAGACTACCGGCGTTGGTGCAAGCACTTCGGGGCCGCGCTTCGAAATGCACTGGCCGGGACAGTCCGCTGGCATGATGTACCTGAATAGCTCCGGCCAGATTACTTGGGGCCAGACCGGCGGGAGCGGTATCTCTGCCAACGACTACACGCACATCAACATGTCGGATGGTTACTTCCTGCATCGTCGTGCAGGTCGCTTCATGGGCACGCTTACAGTGGACGGCGGGCTGTACAGCAACCAGTGGAACCCGCAATCCGGGACTACCCTGATCGCTAACGGGATCCTTAACGTCAACAACTCCATCATCGAGAAGACCGGCGTTGCCCGGCTCCGCGCACCGAACGGGGCCAACTCGCACTTGTTCTTCGAGAACGCGGACGCTTCCGAGCGAGTCCTTGTGTATGCGGACACAGCGCATAACCTGAACATCCGCACCAGCGCTGGGCCTACTCTCGCAACCTTCCGTAACGCGGACAAGGGCTTGACGATCACCGGAGGCATCGGCTGCACCGGCCTAACTTCTAGCGCCCGCGTCCAAGGTAGCGACTTGCTGTCAACGGGTGTGGTGTATGCGGGTTCCGGCGCTGCGTACCTCAACACTGACGGTAACGTGTACGGCGGCACGTGGGGCGGCTGGCTGTCCAACTGGGTCAACTCCAACTTCATCACCCGAGGGGAAGTCGCACCGAACATCCGCGCTAACGTGGCGAGCTGGACTGCGGGACAGGTAGGTACTTACGCCTTGCTGCAAAACAGGGGCTCGCCCGGCGACCCGGACGCTATTCTCGGCGGGGATCAGCTCGCCTGGGCATCCTGCGCAGGTGACTTTAACGCTATCGTAGGTTACGGTCAATGGCGTCTTATGGGCCAAGTGCGAGCCAGCAACAAAGTAACTGTGACTTCCGTATGGTTGAGGATCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f004794f6f30cc975b54101a586828f2c1e0c8d0c1cb2bc0d920efa967cefcbb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7871
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50