Protein

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Genbank accession
YP_002117581.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,74
Protein sequence
MPGIIETISLIVSSLATTTALANALYLGTSALLYGGIAAGALALQGAFASKPAVPKPDDGSYNLKQSVPSLPYVLGRVKKGSDYVFLEEKGGKAHHIMVWAGHRIHAFVSHYLHDEKATLNVDGGVTEPGHYDKDGVSFVHIKTKLGLNAETAYSDVVTAFPTIWDNNCRGDGLASVYMTCRTVDQKDFLDVYPNQMPEHSAVGDGALLYDPRKDSTQGGSGAHRYNNPLTWEFSSNLALMRLWHLCHPVGGKMAYENMYLPDWANAANVCDQNVTNRSGATEKRYHGGFWFRASNDPIEVGRIMDEAAEIVVYERADGKIGVHAGEFVAPDVRLEAKSIYSIRVDKNKRRANTVLGVRGRYVNTAKDYITEDAAIYGDPYAVVDDSTERTRTFDNAAIQSHNHCQRKQKLTFVRANARRVSVVADYTADGVRDIPYRRFVTVHYPSRGLAEAVVEITSSVTIDLRNMRISFSGIIVSPSLYAFNAATEEGEPGESVEPLPDEGVPVPTGFVPTIQTEVVSGGATAAFINATWTFVDDTLTYELEYDRTSGSTGVQSVFSVAGDTQVRSGYLVDGEEYRVRLRAWGGGTKSEWTDYVLLTATADPVAPGAVTAVSVDVSTPSEAEFGWTAPNSANYFACRIYINTVDNLGTATLAATEYGPPSATDLRVVTSLAAGTYYGWLRSINPSGIAGTAVATGAFVVT
Physico‐chemical
properties
protein length:703 AA
molecular weight: 76057,15500 Da
isoelectric point:5,44849
aromaticity:0,09673
hydropathy:-0,17326

Domains

Domains [InterPro]
DC_0754
STR
1–701
DC_0754
IPR003961
STR
512–605
IPR003961
IPR036116
STR
519–686
IPR036116
YP_002117581.1
1 703
Architecture
STR
STR 1-701 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_002117581.1
1 703
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9512
Central domain 17 215 200 0,0848
C-terminal 216 703 487 0,3530
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-215
C-terminal
216-703

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage 16-3
[NCBI] 		10704 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002117581.1 [NCBI]
Genbank nucleotide accession
NC_011103.1 [NCBI]
CDS location
range 13703 -> 15814
strand +
CDS
TTGCCAGGCATTATCGAGACCATTTCGCTGATCGTGTCTTCGCTGGCGACGACGACGGCCCTGGCCAACGCGCTCTACCTCGGCACGTCGGCGCTGCTTTACGGCGGCATCGCGGCCGGAGCTCTAGCGCTGCAGGGCGCGTTCGCTTCCAAGCCAGCCGTGCCGAAGCCAGACGACGGCAGCTATAACCTGAAACAGAGCGTTCCGTCGCTGCCTTACGTGCTCGGGCGCGTCAAGAAGGGTAGCGATTACGTCTTTCTAGAGGAGAAGGGCGGCAAGGCGCACCACATCATGGTGTGGGCGGGGCATCGCATACATGCGTTCGTCTCCCACTACCTGCATGACGAAAAGGCCACCCTGAACGTCGACGGTGGCGTGACCGAGCCAGGCCATTACGACAAGGACGGTGTCAGCTTCGTTCACATCAAGACGAAGCTCGGGCTGAACGCCGAAACGGCATATTCCGACGTAGTTACCGCCTTTCCGACCATTTGGGACAACAACTGCCGCGGAGATGGACTCGCGTCTGTCTACATGACGTGCAGGACTGTCGATCAGAAAGACTTTCTGGATGTCTACCCGAACCAGATGCCGGAGCATTCGGCGGTTGGTGACGGCGCGCTTCTGTATGATCCGCGCAAAGACAGCACGCAGGGCGGATCCGGGGCGCACCGCTACAACAACCCACTGACGTGGGAGTTCTCGAGCAATCTGGCGCTGATGCGCCTATGGCACCTCTGCCACCCCGTCGGCGGCAAGATGGCCTACGAGAACATGTATCTGCCCGACTGGGCGAATGCCGCTAACGTCTGTGACCAGAACGTCACGAACCGCAGCGGGGCAACGGAGAAGCGCTACCACGGCGGCTTCTGGTTCCGCGCCAGCAATGACCCGATCGAAGTCGGGCGCATCATGGACGAAGCCGCCGAGATCGTTGTCTACGAGCGCGCCGACGGCAAGATCGGCGTCCATGCCGGTGAGTTCGTCGCGCCCGATGTGCGGCTGGAGGCCAAGAGCATCTACAGCATCCGCGTCGACAAGAATAAGCGGCGCGCGAACACTGTGCTTGGCGTGCGCGGGCGGTACGTCAATACGGCCAAGGACTACATCACTGAAGACGCCGCGATATACGGCGACCCGTATGCTGTCGTCGACGACAGCACGGAGCGCACGCGGACCTTCGACAATGCGGCAATCCAGAGCCACAACCACTGCCAGCGCAAGCAGAAGTTGACGTTTGTCAGGGCGAACGCTCGGCGCGTCTCGGTGGTCGCGGACTACACGGCAGACGGCGTTAGGGATATCCCTTACCGGCGCTTCGTGACGGTGCACTACCCTAGCCGGGGGCTGGCCGAAGCCGTTGTTGAAATCACATCGAGCGTGACGATTGATCTGCGCAACATGCGCATTTCGTTCTCCGGCATTATCGTGTCACCGAGCCTGTACGCCTTCAACGCCGCAACGGAGGAGGGCGAGCCTGGCGAGTCCGTCGAGCCATTGCCCGATGAGGGCGTCCCGGTCCCGACGGGCTTCGTTCCGACGATCCAAACGGAAGTCGTTTCTGGCGGCGCCACGGCGGCATTCATCAATGCGACGTGGACCTTCGTCGACGACACGCTGACTTACGAGCTCGAATACGACCGCACCAGCGGCTCGACGGGCGTGCAGTCGGTGTTTTCAGTTGCTGGCGATACGCAGGTTCGTTCCGGCTATCTCGTCGACGGCGAGGAATACCGCGTCAGGCTGAGAGCATGGGGCGGCGGCACGAAGTCCGAGTGGACCGATTACGTGCTTCTGACTGCTACGGCGGATCCGGTTGCGCCGGGGGCTGTTACGGCGGTCAGCGTGGATGTGTCGACGCCGTCTGAAGCCGAGTTTGGCTGGACCGCGCCGAACAGCGCCAACTACTTCGCCTGCCGCATTTACATCAACACCGTCGACAACCTGGGAACGGCAACGCTCGCGGCGACCGAATACGGGCCGCCTAGCGCGACCGACTTGCGCGTCGTCACGTCGCTCGCCGCCGGCACCTATTACGGCTGGCTTCGGTCGATCAACCCATCTGGCATCGCCGGTACGGCGGTAGCGACTGGGGCGTTTGTCGTGACGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2b9cbcb77b29e91326e59fab34940737614c2de82742b74eaf75d0df3624e5cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8750
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Related repressor specificity of unrelated phages Dallmann,G., Papp,P.P. and Orosz,L. 1987 — GenBank