Protein

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Genbank accession
YP_009126191.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MAVVGIPGNIGSSAKAETGQASMSAAAVQLRLPATDVWMSQFAGLSKEEIWEWTGPNHSFNKDWLIGELRNRGGTPVVINIRADQVSHTAGVPLFEFPGDLPNAYVTLNIYATIYGRGGNGGGRGNGDKGGDCIHNWIGNRLRINNQGWICGGGGGGGGSYWDPGWGNPQYGAGGGGRPFGVAPWTNFNTPATNGTLEAPGHGSRGGNFGGGDGGQTGANGGGAWGPSGELYGGGASGHAVVGTSPQWINTGNIAGPWL
Physico‐chemical
properties
protein length:259 AA
molecular weight: 26330,57250 Da
isoelectric point:6,18166
aromaticity:0,09653
hydropathy:-0,36448

Domains

Domains [InterPro]
IPR048291
ATT
1–43
IPR048291 IPR007932
DC_1679
STR
6–170
DC_1679
YP_009126191.1
1 259
Architecture
ATT
STR
RBD
ATT 1-43 | STR 44-170 | RBD 171-259
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage STP4-a
[NCBI] 		1445860 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009126191.1 [NCBI]
Genbank nucleotide accession
NC_026607.2 [NCBI]
CDS location
range 151098 -> 151877
strand +
CDS
ATGGCAGTTGTAGGAATTCCAGGAAATATAGGGTCATCCGCCAAGGCAGAAACAGGACAAGCAAGCATGTCAGCTGCTGCGGTACAATTAAGACTACCTGCTACCGATGTATGGATGTCGCAATTTGCTGGTCTCTCTAAAGAAGAAATTTGGGAATGGACTGGTCCAAATCACAGTTTTAATAAAGATTGGTTAATAGGCGAACTTCGTAATAGAGGAGGTACTCCTGTGGTAATTAATATAAGAGCTGACCAGGTTTCGCATACAGCAGGAGTTCCCTTGTTTGAATTTCCTGGAGACCTTCCAAACGCGTATGTTACACTCAACATTTATGCTACTATATACGGTAGAGGCGGTAATGGAGGAGGTCGCGGTAATGGAGATAAAGGCGGCGATTGTATTCATAACTGGATAGGGAATCGGTTAAGAATTAATAACCAAGGATGGATATGCGGCGGTGGCGGCGGCGGCGGCGGGTCATATTGGGACCCAGGTTGGGGAAATCCGCAATACGGAGCCGGTGGTGGCGGCAGACCATTTGGTGTAGCTCCTTGGACTAATTTTAATACCCCAGCAACCAATGGTACACTCGAAGCGCCAGGCCATGGTTCAAGAGGAGGCAACTTTGGCGGTGGCGACGGTGGTCAGACTGGCGCAAATGGCGGAGGTGCTTGGGGCCCGTCTGGAGAATTATATGGCGGTGGCGCATCTGGACACGCAGTAGTAGGAACCTCTCCTCAATGGATAAACACTGGTAATATTGCTGGTCCTTGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1fd6630923814b8f954344abf748c920cd9738618cd02a693c4e1a409d837a86
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8539
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of STP4-a, a novel T4 virulent phage infecting Salmonella Li,M., Wang,J., Lin,H. and Han,F. 2015-11-13 — GenBank