Protein

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Genbank accession
YP_009618339.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MATIKQIQFKRSTASGTKPAVAQLAEGELAINLADRTIFTKDHNNQIIDLGFAKGGTINGDVIQIGNYKQTGQYTLTGNIDASGDITSHGKVWTHALMVRPLDQGASFIIENHSNVSKDLRIIAHSTGELPTDYDRLLFRSINDTNVLDPMSISWSKNSNETVVDVYGKLNSRNLLTANKAVITNNSAIDNVLGDNSIALGDNDTGFKWWADGHYNLVSNGVAVLRLNQSESSFLRTTHFQYSADGWSTTIVPENASLIQVSTEKDDNNIGDGWTHLGLNQGGKYSHYLRGSGTTFIDTLDGLRISTSVSALKGISTEGKGTGDYDSYSLVNWDESPTTSTNHLRKFRPFRTGTIIHELISGTTGDINTTNALSWFHGLGPDNWMASLNADGSFKINGTLETNAAYEAFNIKTRDGAPAYIRGANNNETSWLMGRVKAGSNEFVIRANNLAGQTMVDLVSSPDNKSFAINIDGNIISRFKNDVVTIDGSRWAAIRSHSYGEQWAYDAPVTLDTGSVPGVSDYYPAFSQKSIVANVGFNTKVEFGTLRDSNTWGRGIIRVGTFGYQSDANRQGIFTFTLDGDFQSQRYVIAPHFLTGVSSSAYPDRAGITIGDNDTGIYWGGDGIVAHFANSIQVAVLDSTGFRTEGGRSLVSNGDLNQANDAHSTYVRDIYIRSDIRVKSELRKFESPSETLKKMNGYLYLQKKGFKEDGSINWEQSSGLIAQEVQAVLPELISVDKDNPEGLLRLNYNGIIALNTATINEHTDEISELKARIQKLEEIISALI
Physico‐chemical
properties
protein length:784 AA
molecular weight: 85685,93300 Da
isoelectric point:5,45407
aromaticity:0,08801
hydropathy:-0,35842

Domains

Domains [InterPro]
DC_0012
STR
1–784
DC_0012
IPR030392
CHP
674–732
IPR030392 Coil
IPR030392
CHP
674–773
IPR030392
YP_009618339.1
1 784
Architecture
STR
STR 1-784
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009618339.1
1 784
Domain Start End Length (AA) Confidence
N-terminal 1 74 74 0,5807
Central domain 75 273 200 0,1730
C-terminal 274 784 510 0,9038
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-74
Central
75-273
C-terminal
274-784

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CF1 ERZ-2017
[NCBI] 		2267236 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Moonvirus
Host Citrobacter freundii
[NCBI] 		546 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009618339.1 [NCBI]
Genbank nucleotide accession
NC_042067 [NCBI]
CDS location
range 158751 -> 161105
strand +
CDS
ATGGCTACTATTAAACAAATTCAATTCAAACGATCTACTGCTTCAGGTACAAAGCCGGCAGTAGCTCAGCTAGCAGAAGGCGAATTAGCTATTAATTTAGCTGATCGCACAATTTTCACTAAAGACCATAACAACCAAATTATTGATCTTGGCTTTGCTAAGGGCGGTACAATAAACGGTGATGTTATTCAAATTGGCAACTATAAGCAAACTGGTCAGTATACCTTAACCGGGAACATTGATGCTTCTGGCGATATTACATCTCATGGAAAGGTGTGGACTCACGCACTTATGGTTCGTCCTTTAGATCAAGGCGCATCATTCATTATAGAAAACCATTCTAATGTCTCCAAAGATCTTAGAATAATTGCGCATTCTACTGGCGAACTTCCTACCGATTATGACCGATTACTGTTTAGAAGCATAAATGATACAAATGTTTTAGACCCAATGTCTATTTCATGGTCAAAGAACAGCAATGAAACAGTCGTTGACGTTTATGGCAAACTTAATTCGCGTAATTTGCTTACAGCTAATAAAGCTGTAATAACAAACAATTCTGCTATAGATAATGTGCTTGGTGATAACTCCATCGCATTAGGTGACAATGACACCGGATTTAAATGGTGGGCTGATGGACATTATAACTTAGTTTCAAACGGTGTAGCTGTTCTTCGTTTAAACCAAAGCGAATCATCATTTCTACGTACGACGCATTTCCAATATTCTGCTGATGGGTGGTCAACTACAATTGTCCCTGAAAACGCATCATTAATACAAGTTTCTACAGAAAAAGATGATAATAATATTGGAGATGGATGGACACATTTAGGTCTTAATCAAGGTGGAAAATATTCGCATTATCTTCGTGGATCAGGTACAACATTTATTGATACTCTCGACGGGCTGCGTATTTCCACTTCAGTATCTGCATTAAAAGGCATTAGCACTGAAGGTAAGGGTACTGGGGACTATGATTCATACTCTTTAGTGAATTGGGATGAATCTCCGACAACGAGTACAAACCATTTACGTAAATTCCGTCCGTTCCGCACCGGGACTATTATTCATGAATTAATTTCTGGCACTACTGGCGATATTAATACCACTAATGCTTTAAGTTGGTTTCATGGTTTAGGACCTGACAATTGGATGGCTTCTTTGAATGCTGACGGAAGCTTTAAGATAAATGGTACTCTAGAAACTAATGCAGCTTATGAAGCGTTCAATATTAAAACTAGAGATGGTGCTCCTGCTTATATTCGCGGTGCCAATAATAACGAAACATCTTGGCTGATGGGGCGAGTTAAAGCTGGTAGTAATGAGTTTGTAATACGAGCAAATAACTTAGCCGGGCAGACTATGGTTGATCTAGTTTCATCACCCGATAATAAGAGCTTTGCTATTAATATTGACGGTAATATAATTTCTAGATTCAAAAACGATGTGGTTACTATTGATGGTTCTCGTTGGGCTGCAATAAGGTCTCATTCATACGGTGAGCAATGGGCTTATGACGCTCCAGTAACTCTTGATACGGGAAGTGTTCCGGGAGTTTCAGATTACTATCCTGCATTTTCACAAAAGTCAATTGTGGCTAATGTCGGCTTTAATACTAAGGTTGAATTTGGTACTCTTAGAGATAGTAATACATGGGGCCGAGGTATTATTCGTGTTGGTACATTTGGATATCAATCGGATGCTAATAGACAAGGTATTTTTACTTTTACATTGGATGGAGATTTTCAATCTCAACGATATGTTATTGCACCTCATTTCTTGACCGGAGTATCTTCATCAGCTTATCCTGATAGAGCAGGTATAACTATCGGGGATAACGACACTGGAATTTACTGGGGTGGAGACGGGATTGTCGCTCACTTTGCAAACTCTATTCAAGTTGCTGTATTAGATAGCACTGGATTCCGTACCGAAGGTGGACGTAGTTTAGTTTCAAATGGTGACTTAAACCAAGCAAATGATGCTCACTCTACTTATGTTCGCGATATCTATATTCGTTCAGATATTCGTGTTAAGAGTGAACTTCGTAAATTTGAATCTCCTTCTGAAACTCTTAAGAAGATGAACGGATATTTGTATCTTCAGAAGAAAGGTTTCAAAGAAGATGGTTCTATTAATTGGGAACAGTCATCTGGTTTAATTGCTCAGGAAGTTCAAGCTGTATTACCTGAATTGATTTCAGTCGATAAAGATAACCCAGAAGGATTACTTCGTCTGAACTACAACGGTATTATTGCGCTGAACACTGCAACAATTAACGAACATACTGATGAGATTTCTGAATTAAAAGCTCGTATTCAGAAGCTTGAAGAAATCATTTCTGCATTAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce90e8e4eb019b8beebe291707a46ef6654a4bf05206f418aba12686c9559bb8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5749
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparation Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank