Protein

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Genbank accession
YP_009813538.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPRFRVRNLENNGWYDCADTPMFIRTKENTWQPLTVDTFSVRGLHGKRWYDIDAEFDPNFDDPCINQEIGNCGGAPTSTTKGSGTGDGSRGAKYDPLKGYPAGYDLPDAARTGFGVGIGNVPPTSRYITRPGIRTIESYDPTGLASQAGLGTWTNPNVPWASVHSRGAQITETIFAIPRQEGYVEITFASYHADGLSVDVYAEGIRVASTCGKVGGRGRIKFLNDPDAEDMRIMIRVRTSQGANWSLQVIPPKLNATTDRANLALDSQAAYDVLTYPDVIVPEYIGTPIFPAPCHATVWPIVDRIVDSNAFEYYHYIGNNVGWTYLNYTSWDNLDYIEVYHAGRRIASTQEAQTGRGYLYFYYDPTGTQNFDLMVRVVAKDFGKNNSINSFYYSLYCPNERGAREYRFPCQYDWVVSAGHPTTEDNFALGTQTDIRAGLVDVRAGSFDTKFEVFDQEMNLLDTENLLAGQSGTLEFWKYPEHVLRSNITVRVTSGIGCDWSYFVWCPIQPPKLNVQDFSVPYNCLSVDDPNNPNNAIWTMSKGVLRYWGNVDHTVNLNFRIATVDGNRWTGSGRGSALTPAVASTGGYFQKTNETKHGDLWGNLEYEPWPLTIGNRSIVAVSTSFTWTGTIYTASLAQLPSAANGWVGVVTVYTPEADEQYVDLRVNVTVTYG
Physico‐chemical
properties
protein length:673 AA
molecular weight: 74922,45050 Da
isoelectric point:5,07330
aromaticity:0,12630
hydropathy:-0,37548

Domains

Domains [InterPro]
DC_2160
ATT
1–267
DC_2160
DC_1307
STR
250–673
DC_1307
YP_009813538.1
1 673
Architecture
ATT
STR
ATT 1-267 | STR 268-673
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009813538.1 [NCBI]
Genbank nucleotide accession
NC_048077.1 [NCBI]
CDS location
range 61610 -> 63631
strand -
CDS
ATGCCTCGTTTTCGCGTAAGAAATTTAGAAAACAACGGCTGGTACGATTGCGCGGATACTCCGATGTTCATTCGAACAAAAGAAAATACGTGGCAACCATTAACAGTCGATACTTTTTCTGTTCGCGGTTTGCATGGAAAACGCTGGTACGATATTGATGCAGAGTTTGATCCTAACTTTGATGATCCATGTATCAATCAGGAAATCGGAAATTGTGGTGGTGCTCCAACTTCCACCACAAAAGGTTCCGGTACTGGCGACGGTTCGCGTGGTGCTAAATATGATCCGTTAAAAGGTTATCCTGCTGGATATGATTTACCGGATGCTGCGCGAACTGGTTTCGGTGTGGGGATTGGCAACGTTCCTCCTACGTCGCGTTATATTACTCGACCGGGAATAAGAACAATTGAAAGTTACGATCCAACGGGTCTTGCCTCGCAAGCAGGTTTAGGAACGTGGACGAACCCTAACGTGCCGTGGGCTTCCGTGCATTCTCGCGGCGCACAAATCACTGAAACAATTTTCGCAATTCCACGACAAGAAGGTTATGTTGAAATAACTTTCGCAAGTTATCATGCAGACGGTTTAAGTGTGGATGTTTACGCCGAAGGAATTCGCGTTGCGTCTACGTGTGGAAAAGTTGGCGGTCGCGGTCGAATTAAATTCCTTAACGATCCTGATGCGGAAGATATGCGTATCATGATTCGTGTTCGTACTTCTCAAGGTGCGAACTGGAGTTTGCAGGTTATACCGCCAAAACTCAATGCAACTACTGACCGCGCAAACTTAGCGCTGGATAGTCAAGCGGCATATGATGTTTTAACTTATCCGGATGTTATTGTTCCTGAATATATCGGCACTCCTATTTTTCCTGCGCCGTGTCACGCAACTGTTTGGCCTATTGTTGATCGTATCGTCGATAGTAATGCTTTTGAATATTATCACTACATCGGCAATAACGTTGGTTGGACTTATCTCAACTATACGTCATGGGATAACTTAGATTACATCGAAGTTTATCATGCAGGCCGACGAATTGCGTCAACGCAAGAAGCACAAACTGGTCGTGGCTATCTTTATTTTTATTATGATCCGACTGGCACACAAAACTTCGATCTTATGGTCAGAGTTGTGGCGAAAGATTTCGGGAAAAATAATTCTATTAATAGCTTCTACTATTCTCTGTATTGTCCGAACGAACGAGGCGCACGCGAATATCGTTTCCCTTGTCAGTATGATTGGGTAGTGAGCGCAGGCCATCCGACTACAGAAGATAACTTCGCATTGGGAACACAAACGGATATTCGCGCAGGCTTAGTTGATGTGCGTGCCGGAAGTTTCGATACGAAGTTTGAAGTTTTCGATCAGGAAATGAATCTGCTCGATACTGAAAATCTTCTGGCTGGACAATCTGGAACACTCGAATTCTGGAAGTATCCGGAACACGTTCTCCGTAGCAATATCACGGTACGCGTAACGAGTGGTATTGGATGTGATTGGAGTTATTTCGTCTGGTGTCCAATTCAACCTCCAAAATTAAATGTGCAAGATTTTTCTGTTCCGTACAACTGTTTGTCTGTTGATGATCCAAACAATCCAAATAATGCTATCTGGACGATGAGCAAAGGCGTTCTGCGTTATTGGGGTAACGTTGACCATACAGTGAATCTGAATTTCAGAATCGCAACTGTTGATGGAAACCGTTGGACAGGTTCAGGAAGAGGAAGTGCATTAACACCTGCTGTTGCGTCAACTGGTGGTTATTTCCAGAAAACAAACGAAACAAAACACGGTGACTTGTGGGGCAACTTGGAATACGAGCCGTGGCCTCTGACAATCGGTAACAGAAGTATCGTTGCGGTTTCAACAAGTTTTACGTGGACTGGTACGATCTACACTGCAAGTCTTGCGCAGTTGCCTAGCGCAGCGAACGGTTGGGTCGGCGTTGTTACTGTTTATACTCCAGAAGCAGATGAGCAATACGTTGATTTGCGAGTTAACGTAACAGTCACTTACGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
758fb5e7f4217007d960cb6f06092ea532ff787d4c5d6380f3d020c776e5b94f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4035
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank