Protein

View in Explore
Genbank accession
AGH56449.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSIQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYIVDNRPGEVLYTNTAPIDANSNLDLTSPNNVLHKFNSVEGGIIVPRGCSLVGTDLRRTKVIPKYVPYPTIYAAKGINTEDQVPPRTSIFRVTGGTYFWQFSFFDGAEEGVYFKPDSTETLAPKFSHHRLTCFEFADGLNPLSKLISDGSVPNADYSAVPNILERTDLEIYYQKVSKAFATIPDTSGDPSTDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDNPRDHGFSVGVNINVSGVTGSTGPQSELDASVYNGSFTVTSASGNVFTYQMQSEPTGNAVGSNITVKTEIDTVDSASPYAFNLSLRSVWGMNGMNANGSKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATSGDGAHLDGFAEYRKGWGHRHIVCSNDSFIQAVSVFAVGYDTHFTAESGGDMSITNSNSNFGNTALRSAGFKAKSFSKDKAGAVTHIIPPKALSVISTTATGTSGASSITLANDGSINGIIQGMNVTGSGVGVGATVGSVNTNTRVVTLTATNTAAINGNVIFGEETSVNWVNIDIQRTKVINQSLAGSGGSPGSRLYLYGYTVEASPPTNKVQGFTVGARQDGTGANAVADKINCLLVANGAATATTQSATISPYGPSVSGLKAGVDGSPLQFDSATYTINGQAGSVGGWYLSVTADADPNSDTYNRIYNTLTTNNDYNNVNFTPTTFLKRIADGRNLQDRTYRIRLVIDKDKTNPLPRDPLSGYVMQPLNSDTTSYNLQNTFYIYDIEVVQEFERGIADGIYYITLLYASVAPSTSNFNNRKFSQNVNEVYPTFDRDNPVADPLAAVSVADNQTIGLVNATDGATPPAKDPKLSITKEAIVKMLTDTGWTQPGTTPGYESATARLSNVELTARAGDEEERKINIRNNNDGTVSPIPVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLSADQIKFSQSIKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVVGEENTTIETFSELVLTDKLTVIGGASNQLESIFAGPVTFQGQTTFTNNLSAKKISYFNQDGTVVKQTLLAPADANGQPSFANITGYTTPADGDLVYNINWTPGKSLGWIYYGGAWKEFGLTDTGQINIDTFNNNQHIGLGVAPTADYRVNVNGSARVDGDLIVTGRGGVGPDKYITKTYTGDGTTLTFAITTYTGVQHVDDSVLVFLNGVAQIAGTNYTVDSNGANVVFSSGDAPLASDTVHIVEMPI
Physico‐chemical
properties
protein length:1325 AA
molecular weight: 142049,38760 Da
isoelectric point:4,89244
aromaticity:0,09208
hydropathy:-0,25834

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56449.1
1 1325
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,9461
Central domain 83 311 230 0,9608
C-terminal 312 1325 1013 0,1775
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-311
C-terminal
312-1325

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage Syn2
[NCBI] 		536473 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56449.1 [NCBI]
Genbank nucleotide accession
HQ634190.1 [NCBI]
CDS location
range 136699 -> 140676
strand +
CDS
ATGTCCCTTACTAGACTTAAGAATATTATTACGTCCAGAACTGGACGTATCATCTATGTCAACCCTGACGACTTCGATGCCTCTGATGCTATTGACAACAGAGGTAACTCTGCACTGAGACCGTTTAAGTCTATCCAGAGAGCATTTCTTGAAGTTGCAAGATTCTCCTATCGAGTGGGTCTGTCGAACGACGAATTCGACGCCTTCTCGATTATGCTGTATCCAGCAGAATATATTGTAGATAATCGTCCTGGTGAGGTTCTGTATACTAATACAGCACCTATTGATGCAAACTCAAACCTTGACTTAACTTCTCCTAATAATGTTCTTCATAAGTTCAATTCTGTAGAAGGAGGGATCATTGTTCCCAGAGGTTGTTCGCTGGTTGGAACCGATCTTCGTCGTACCAAGGTTATTCCTAAGTACGTTCCTTATCCTACGATCTATGCTGCTAAGGGTATCAATACAGAAGATCAAGTACCTCCCCGCACCTCGATCTTCAGGGTTACTGGTGGAACATACTTCTGGCAGTTCTCCTTCTTCGATGGTGCTGAGGAAGGTGTATACTTCAAACCTGATAGCACAGAAACATTAGCACCTAAGTTTTCACATCACAGACTCACTTGCTTTGAGTTTGCTGATGGTCTTAATCCCCTTTCTAAGTTAATCTCTGACGGCAGTGTTCCTAACGCAGATTATTCTGCTGTGCCTAACATCTTAGAAAGAACTGACCTGGAGATTTATTATCAAAAGGTATCTAAAGCATTCGCTACAATTCCTGATACATCTGGTGATCCCTCAACTGACCAGATTCAGGCAAGGGTCGAAGAAAACCGTATTGTTGGTCCTATTTCCGATGAGTACAGAGTCCTTCAGATCACAAGAAATGGTCAGACAGCAACGGCGGTCACTGTTGACGAGTTTGATAACCCCAGGGACCATGGATTTTCCGTTGGTGTTAACATTAACGTTAGTGGAGTTACTGGATCTACTGGACCGCAATCCGAACTTGATGCATCAGTTTACAACGGATCTTTCACAGTCACATCCGCATCTGGTAACGTCTTTACTTACCAAATGCAATCTGAACCAACAGGTAACGCAGTCGGATCAAACATCACTGTAAAGACTGAGATTGATACTGTTGACTCTGCATCTCCATATGCGTTCAACCTGTCACTCCGCTCGGTGTGGGGTATGAATGGTATGAATGCTAATGGTAGCAAAGCAACTGGTTTCAAATCAATGGTTGTGGCGCAGTTCACTGGTCTGTCACTGCAAAAAGATGATAGAGCGTTCGTAAGATATAATGCCTCTACTGGTAACTATGATGTAGCAACATCTGGCGACGGTGCTCACTTAGATGGTTTTGCTGAGTATCGTAAAGGTTGGGGACACAGACACATTGTCTGCTCTAATGACTCATTCATTCAGGCAGTTTCGGTGTTCGCTGTTGGATATGACACACACTTCACTGCTGAGAGTGGCGGTGACATGTCAATTACAAACTCTAACAGTAACTTTGGTAATACCGCTCTTAGATCTGCTGGATTCAAAGCAAAATCATTCTCGAAAGATAAGGCAGGCGCAGTCACTCATATCATTCCACCCAAAGCATTATCGGTTATTTCTACAACTGCAACGGGTACTTCTGGTGCATCATCGATCACTCTCGCTAACGACGGTTCGATCAATGGTATCATCCAAGGCATGAATGTTACAGGATCTGGTGTTGGCGTTGGTGCCACCGTTGGTTCTGTGAATACAAACACTAGAGTCGTCACGTTAACTGCTACAAATACTGCTGCAATTAACGGCAACGTTATCTTTGGTGAAGAAACATCAGTTAACTGGGTAAACATTGACATACAAAGAACAAAAGTCATCAACCAATCCCTTGCAGGATCTGGAGGATCCCCTGGATCTAGACTCTATCTCTACGGATATACTGTTGAGGCATCACCTCCAACAAATAAAGTCCAAGGTTTCACCGTTGGTGCTCGTCAGGACGGCACGGGCGCTAATGCTGTCGCGGACAAGATTAATTGCTTGCTTGTAGCAAATGGTGCAGCGACTGCTACAACACAATCTGCAACTATCTCACCATATGGACCTAGTGTTTCTGGTCTAAAAGCAGGTGTTGATGGTTCACCGCTTCAATTTGATAGTGCTACTTATACTATCAATGGTCAGGCAGGTAGTGTTGGTGGTTGGTATTTGTCTGTAACAGCAGATGCTGATCCTAATAGTGATACTTACAATAGAATTTACAATACACTTACTACAAACAACGATTATAATAACGTAAACTTCACTCCTACTACATTCCTGAAGCGTATTGCTGACGGTAGAAACCTTCAGGATAGAACGTATCGCATTCGCCTGGTTATTGATAAGGATAAGACTAATCCTCTGCCTCGTGATCCCCTCTCTGGTTATGTAATGCAACCATTGAATAGTGATACGACATCATACAATCTGCAAAATACTTTCTACATCTACGATATTGAAGTTGTACAAGAGTTCGAGCGAGGTATTGCCGATGGAATCTACTACATTACCCTCCTTTATGCATCTGTTGCTCCTAGCACAAGTAACTTCAACAACAGGAAGTTCTCTCAAAACGTCAACGAAGTCTATCCTACGTTTGACAGAGACAACCCTGTTGCTGACCCTCTTGCTGCTGTATCCGTCGCTGACAACCAAACTATCGGTCTAGTAAATGCTACCGATGGTGCTACACCACCTGCAAAAGATCCTAAGTTGTCTATCACTAAGGAAGCAATCGTTAAGATGCTGACTGATACTGGATGGACACAACCAGGTACAACTCCTGGATATGAATCTGCAACAGCGAGACTATCTAATGTTGAATTGACTGCTCGTGCAGGTGATGAAGAAGAGAGAAAGATTAACATCCGTAATAACAACGATGGAACTGTTTCTCCTATCCCCGTTGAGTTTAGACGCCACTCGATTCTGAGATCTGGTAACCATACATTTGAATATCTTGGTTTCGGTCCTGGTAACTACTCGACTGCATTCCCGCAGACTCAGGTAGAAACTCTGAGTGCTGATCAGATTAAGTTCTCTCAGTCAATTAAAGAAGAAGCAGGTGTTGCTTTCTACTCTGGTCTTAACTCTAACGGTGACCTGTTTATTGGTAACCAGGTTATCAACCCTGTTACGGGTCAAATCACAAACGAAGATATTGCACAACTGAATGTTGTTGGTGAAGAGAATACAACTATTGAAACATTCTCTGAGTTGGTTCTTACTGACAAACTCACGGTTATCGGTGGTGCATCTAACCAGTTAGAATCTATCTTCGCTGGTCCTGTTACATTCCAAGGACAAACTACCTTCACAAATAACCTTTCTGCTAAGAAGATTTCGTACTTCAACCAGGATGGCACGGTCGTCAAGCAAACCTTATTGGCACCAGCAGATGCAAATGGACAACCCTCTTTTGCTAATATCACGGGATACACTACGCCCGCTGATGGTGATCTTGTTTATAACATTAATTGGACACCAGGCAAGTCGCTTGGTTGGATATACTACGGTGGAGCATGGAAAGAATTTGGTCTCACAGATACTGGTCAGATTAATATTGATACTTTCAATAACAATCAACACATTGGTCTTGGTGTTGCTCCTACAGCTGATTATCGCGTAAATGTAAACGGTAGTGCAAGAGTTGATGGTGACTTGATTGTCACTGGTCGTGGCGGTGTTGGTCCCGACAAATATATTACTAAGACATATACAGGTGATGGAACAACCCTAACCTTTGCTATTACTACCTATACAGGTGTTCAGCACGTTGACGATTCTGTTCTGGTATTCCTGAACGGTGTTGCTCAAATTGCAGGAACAAATTATACTGTGGACTCTAATGGTGCAAACGTTGTATTCTCTTCTGGAGATGCACCTTTGGCATCGGATACAGTTCATATTGTCGAAATGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ec657e3e74b0669c17b12fc7b1a1a2051f832fd84423669ab7da383de730d676
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3801
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank