Protein

View in Explore
Genbank accession
WMT11387.1 [GenBank]
Protein name
putative tape measure protein
RBP type
TF
Evidence RBPdetect
Probability 0,78
Protein sequence
MTDKLIRELLIDVKQKGATRTAKSIENVSDALENAAAASELTNEQLGKMPKTLYSIERAADRAAKSLTKMQASRGMAGITKSIEGIGDKLDDLALAMIEVSEKLESGFTHVGKSVKAMGNDVAAATEKVQDRLYDTNRALGNTARGFNDTTTSAGRASRAIGNTSGSARGATRDFAAMAKVGGSLPLMYAAIASNVFVLQSAFEQLKMGDQLNRLEKFGTIVGTQTGTPVQTLARSLQEAAGYAISFEEAMRQASSASAYGFDAEQLNKFGLVARRAAAVLGVDMTDALNRVIKGVSKQEIELLDELGVTIRLNDAYADYVKQLNAANTGITYNVNSLSTFQKQQAYANAVIAESTKRFGYLDDVLRATPWEQFAANADAALRKVQQAAAKYLGPVIDSINAVFYTSQASISASAARAQEETNRQIDPTNVGAVALSLSASEEGYNKALDMYKESLEKRNKLKADLDKRMQQADASTAGAIRLVAQGAPVGLAAGGFEVGGVRIGSSEENQKFIADTAALALQVERLDKEVEDSTGNLNAWKSAYQAAGAAAAKSNTEFQKQINLQKDANDPDAVYDFNSATLKGLTEQQKAYDQAKKTASDLANDIQNIAQNTNTAAKTSASLSDTIKTIESLSAGTGKNADEYVKSLNLGYNTLSEMKTASQALAGYVKLTGNETKNQLEVQQKIAEVYNQTKDKEKAQEAGRRLEIQQLEEQEAALKRVLETNKGNKAIEGEIAKIQLERIKITNQGMEAQKKVKDYTDKILGVDREIALLNNRTMTDTQYRLAQLNLELTVEKEKYEWYSKQVDKHKEAEQSRRAQAQIEREIWKFRQDQQREMAAGREEEQQRKFTANPLMGAAERIKEQIQLFEDLKQKTLGNAAAQLEYNKKLAETRAQLAALRVQRDAEMQSSVGAAVGATYTPTTGLTGEDKNFADMQNRMASYDQAISKLSELNSEATAVAQSMGNLTNAMIQFSQGSLDTTSLVAAGMQTVSSMIQYSVGQQVSAIDAAIAAEQKRDGKSEQSKAKIKKLEAEKLKIQQDAAKKQIIIQTAVAVMQAATAVPYPFSIPLMVAAGLAGAMALAQASSASGMSSIGDSGAETAGYLTLGERQKNVDVSMSANAGELSYIRGDQGIGNANSFVPRAEGGNMYPGVSYQMGEHGTEVITPMVPMKATPTDELKGSSKGTSGRPIVLNISTMDAASFRDFASSNSAAFRDAVEQALNENGTTLKSLGNS
Physico‐chemical
properties
protein length:1235 AA
molecular weight: 132856,62760 Da
isoelectric point:5,85046
aromaticity:0,05263
hydropathy:-0,43142

Domains

Domains [InterPro]
IPR056207
TAS
1–81
IPR056207 DC_0073 IPR056208
Coil
Unmapped
586–613
Coil Coil Coil
WMT11387.1
1 1235
Architecture
TAS
STR
TAS
TAS 1-81 | STR 82-1197 | TAS 1198-1233 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage EH5
[NCBI] 		2986510 Viruses >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMT11387.1 [NCBI]
Genbank nucleotide accession
OR413346 [NCBI]
CDS location
range 94780 -> 98487
strand -
CDS
ATGACTGATAAGCTAATACGAGAACTACTTATAGATGTAAAGCAGAAAGGGGCAACCCGTACTGCAAAATCTATTGAGAACGTTTCCGATGCGTTAGAAAATGCTGCTGCCGCTTCCGAACTGACTAATGAGCAGTTAGGAAAAATGCCCAAAACTCTTTACTCCATTGAGAGGGCGGCGGATAGAGCAGCTAAAAGTCTAACTAAAATGCAGGCTAGTAGAGGTATGGCTGGTATCACTAAATCCATTGAAGGTATTGGTGATAAGCTAGATGATCTTGCCCTTGCTATGATCGAAGTATCTGAGAAGCTAGAGTCTGGATTTACACATGTGGGTAAATCTGTTAAGGCTATGGGTAACGATGTAGCTGCTGCAACCGAAAAAGTTCAAGATAGATTATATGATACTAACCGAGCACTAGGCAATACTGCTAGAGGCTTTAACGATACAACTACCTCCGCAGGACGTGCTAGTCGTGCAATTGGTAATACTTCTGGTTCAGCACGTGGTGCTACTCGTGACTTCGCAGCAATGGCTAAAGTGGGTGGTAGTTTACCTCTTATGTATGCTGCTATCGCGTCTAACGTGTTCGTTCTACAATCTGCATTCGAACAACTTAAGATGGGTGACCAGTTAAACCGTCTTGAGAAGTTTGGTACTATTGTTGGTACTCAAACAGGTACTCCTGTACAAACTCTAGCTAGATCTCTACAAGAGGCTGCTGGTTATGCAATCTCCTTCGAAGAAGCAATGAGACAGGCATCCTCTGCTTCTGCATATGGATTCGATGCTGAACAACTTAATAAATTTGGTCTAGTAGCTCGTCGTGCTGCTGCTGTTCTTGGTGTTGATATGACTGATGCACTTAACCGTGTAATCAAGGGCGTATCTAAACAAGAAATCGAACTTCTGGACGAACTTGGTGTTACTATTCGTCTTAACGATGCTTACGCAGACTACGTTAAACAGTTAAATGCTGCTAACACAGGTATTACATATAACGTTAATAGTCTCTCTACTTTCCAGAAGCAACAAGCATATGCTAACGCAGTTATCGCTGAATCTACTAAACGTTTCGGCTATCTTGATGATGTACTTCGTGCAACCCCCTGGGAACAGTTTGCTGCTAATGCTGATGCTGCACTGAGAAAGGTTCAACAGGCTGCTGCTAAGTATTTAGGGCCAGTAATTGATTCTATCAACGCAGTATTCTATACTTCTCAAGCATCTATCTCGGCCTCTGCTGCTAGAGCACAGGAAGAAACTAACCGTCAGATTGACCCAACTAACGTTGGTGCTGTAGCTTTAAGTCTTTCCGCTTCTGAGGAAGGATATAATAAAGCTCTTGATATGTACAAAGAATCTCTAGAAAAGCGTAATAAGTTAAAAGCTGATCTAGATAAGCGTATGCAGCAAGCAGATGCATCTACAGCAGGGGCTATTCGTTTAGTTGCTCAAGGTGCACCGGTAGGGTTAGCTGCAGGAGGTTTTGAAGTAGGAGGAGTTCGCATAGGATCTTCTGAAGAAAACCAGAAATTCATTGCAGATACTGCTGCATTAGCTCTCCAGGTAGAGCGTCTTGATAAGGAAGTAGAGGATTCAACTGGCAATCTTAATGCATGGAAATCGGCATACCAAGCTGCTGGTGCTGCCGCAGCCAAATCTAATACAGAATTCCAGAAGCAAATTAACCTACAGAAAGATGCAAATGACCCGGATGCGGTTTATGACTTTAACTCTGCAACTCTGAAAGGATTGACAGAACAGCAGAAAGCGTATGACCAAGCCAAGAAAACTGCCAGTGACTTAGCTAACGATATCCAGAACATTGCTCAGAATACTAATACTGCGGCTAAAACTAGTGCATCCTTATCAGATACGATTAAGACTATTGAGTCTCTGTCCGCGGGTACTGGTAAAAATGCTGATGAGTATGTTAAGAGCCTGAATTTAGGGTATAATACTCTTAGTGAGATGAAGACTGCTTCACAAGCTCTTGCTGGTTACGTAAAATTAACTGGTAATGAGACTAAGAATCAGTTAGAAGTTCAGCAAAAGATTGCAGAAGTATACAACCAGACTAAGGACAAAGAGAAAGCACAGGAAGCTGGTAGACGTCTGGAAATCCAACAGTTAGAAGAACAGGAAGCAGCTCTTAAGCGTGTCCTAGAAACTAACAAAGGTAACAAAGCAATCGAAGGTGAAATAGCTAAGATTCAGTTAGAACGTATCAAGATTACTAACCAGGGTATGGAAGCTCAGAAGAAGGTTAAGGACTATACCGATAAGATTCTTGGTGTTGATCGTGAAATTGCTCTCCTGAATAACCGTACTATGACAGATACTCAATATCGTTTAGCTCAGTTGAATCTTGAACTGACTGTCGAGAAAGAAAAGTATGAATGGTACTCCAAACAGGTTGATAAGCATAAGGAAGCTGAACAATCAAGACGTGCTCAGGCACAAATTGAACGTGAAATCTGGAAATTCCGTCAGGATCAGCAAAGGGAAATGGCTGCTGGCAGGGAAGAGGAGCAACAAAGGAAGTTTACTGCAAATCCTTTAATGGGAGCTGCGGAACGTATCAAGGAGCAAATCCAGCTATTCGAAGACCTTAAGCAAAAAACTTTAGGGAATGCTGCTGCTCAGTTAGAGTATAATAAAAAGCTAGCAGAAACTAGAGCCCAGCTCGCAGCTTTAAGAGTACAGCGCGATGCAGAAATGCAGTCTTCTGTAGGTGCGGCTGTAGGGGCTACCTATACTCCTACTACTGGATTAACTGGAGAAGATAAAAACTTCGCAGATATGCAGAATAGAATGGCGTCCTATGACCAGGCTATTTCTAAGCTGTCTGAACTGAACTCCGAAGCAACTGCTGTAGCACAAAGTATGGGTAACCTAACTAATGCTATGATCCAGTTCTCTCAAGGATCTCTGGATACTACCTCTCTAGTAGCGGCTGGTATGCAAACTGTATCTTCAATGATTCAGTATAGTGTTGGTCAACAGGTAAGTGCTATTGATGCAGCTATTGCAGCAGAACAGAAACGTGATGGTAAATCTGAGCAATCTAAAGCTAAGATCAAGAAGTTAGAGGCTGAAAAGCTCAAGATCCAGCAAGATGCAGCTAAGAAGCAAATCATTATCCAGACGGCAGTAGCGGTGATGCAGGCAGCAACAGCTGTTCCGTATCCATTCTCTATTCCTCTGATGGTTGCGGCTGGTTTAGCAGGTGCTATGGCTCTTGCTCAAGCATCTTCTGCATCTGGTATGTCTTCTATTGGGGACTCTGGTGCTGAGACAGCTGGTTACTTAACTCTTGGAGAACGCCAGAAGAATGTAGACGTTTCTATGTCGGCTAATGCAGGTGAACTTTCTTATATTCGAGGAGATCAAGGGATTGGTAATGCTAACTCTTTCGTACCTCGTGCAGAAGGTGGTAATATGTATCCTGGAGTTAGTTACCAGATGGGTGAGCATGGTACCGAAGTAATCACTCCTATGGTTCCGATGAAGGCTACCCCTACTGATGAACTCAAAGGATCTTCAAAAGGCACATCGGGTAGACCTATTGTGCTGAACATCAGTACGATGGATGCGGCTAGCTTCCGAGATTTTGCTTCGAGCAATAGTGCTGCTTTCAGGGATGCCGTGGAACAGGCTCTTAATGAGAATGGAACCACCCTGAAATCACTTGGTAATTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b7b823c5d2e7996812740d94019d5a9717a831d301a2736920cb77f0a2ce6ce0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4173
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Salmonella and Escherichia coli-specific bacteriophages collected from Minnesota Wastewater Treatment Plant Cortes Ortega,E., Hansen,E.G., Farmer,M.L., Martinez-Villalobos,J.M. and Bowden,S.D. 2024-11-27 — GenBank