Protein

View in Explore
Genbank accession
QGZ17767.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,67
Protein sequence
MSYIGLPPKATFSSGLLDRFTSTTGTTVTLTHDIASENDIVVFVNFVKQDSTTYSVGGTGNKTLTLGGTLVSSDIVEVHYLNIVGQTVNPSANSVGSSQLTSDVITGQTALAVAPDSTDELLISDAGVLKRVDVSLIGGANTPAFRAFLNSNKTMSDATTTKVDTFGTEDFDTDNNFASSRFTPTTAGKYFVFLQLAITNTTDADVMYYAETYIYKNGSQLVKNTLDPKNSNPSNQAILYNATIVDMNGSSDYLEAYANSGVASGAPLVGNGTNQSYFGAYKLIGV
Physico‐chemical
properties
protein length:286 AA
molecular weight: 30194,04410 Da
isoelectric point:4,43091
aromaticity:0,09091
hydropathy:-0,05944

Domains

Domains [InterPro]
DC_1764
ATT
67–174
DC_1764
IPR008983
RBD
139–285
IPR008983
IPR008983
RBD
143–282
IPR008983
QGZ17767.1
1 286
Architecture
ATT
RBD
ATT 67-174 | RBD 175-285 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC026P
[NCBI] 		2686456 No lineage information
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ17767.1 [NCBI]
Genbank nucleotide accession
MN698240.1 [NCBI]
CDS location
range 25466 -> 26326
strand +
CDS
ATGAGTTATATTGGACTCCCACCAAAAGCAACATTTTCTTCAGGATTACTAGATAGATTCACAAGTACAACAGGCACTACTGTAACATTAACTCATGACATAGCATCAGAAAACGACATTGTGGTTTTTGTTAATTTTGTAAAACAAGATAGCACAACTTATTCAGTAGGTGGAACAGGAAACAAAACTTTAACTTTAGGTGGCACATTAGTTTCATCTGATATTGTAGAAGTTCATTATTTAAACATTGTAGGTCAAACAGTAAATCCATCTGCAAATAGTGTTGGCAGTTCTCAATTAACTTCTGATGTAATTACAGGGCAAACAGCTTTAGCAGTAGCACCTGATTCTACTGACGAACTTTTAATTTCTGATGCTGGAGTTTTAAAAAGAGTAGATGTATCTTTAATTGGTGGTGCTAACACTCCAGCATTTAGAGCTTTTCTAAACTCTAATAAAACTATGAGTGATGCTACTACAACTAAAGTGGATACATTTGGAACAGAGGATTTTGATACTGATAATAATTTTGCTTCAAGTAGATTTACACCAACAACTGCTGGTAAATATTTTGTATTTCTTCAACTTGCAATTACCAATACTACTGATGCTGATGTTATGTATTATGCAGAAACATATATTTACAAAAATGGTTCTCAGTTAGTAAAAAATACACTTGATCCAAAAAATTCTAATCCATCAAATCAAGCTATTCTTTATAATGCAACAATAGTAGATATGAATGGATCAAGTGATTATTTAGAAGCTTATGCTAATTCTGGTGTTGCAAGTGGTGCGCCATTAGTAGGTAATGGAACTAATCAAAGTTATTTTGGTGCATACAAATTAATAGGAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
78af9c65ef3c270ef14ee3e8a0ea7cb0acd35e182a77c756757173a9d26a71cb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8250
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank