Protein

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Genbank accession
AMR58143.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MDLIKYDMTNIWAVAGDVVAPEVAKIRQGWGVEVVPRQWWNWFENRQDNNIAYILQKGIPEWDSTTEYIINKSYVQRNGITYKCTQTGTNSDPVSLVGWVKAFVESTPYLEKVKNTQLVNSSIPAINSSGDASYALYGEVGLQSLVASTQLQGRNAIQAQQASSNLSALSGVTASTNGLPYFTSTTAMGIATLTSFGRSFISANDSASARSLLGLGSSATLNVGTTANTVAAGDDPRITGAMQRGNNLADLLNIGSARANLGLGTAAVQNITTTPTDTTGGRLLKVGDFGIGAISGISVPDANAISATGVYAIQNNTTNLPSGVGAGGTIFNQIWDSNSSQQILMFGSKLWIRTKATSWGNWQEVYTTSNSNALASQVQASLQPALDLKVNRSGDAMTGSLTLPSMEIGSGSQQGYIDFHSSNTNNDYDSRIVSSLGNSTTGQGALNYIAAGGHYFTGLINGTATVAQSLTGNIGIGQVNSLQAQLDGKMSVSGGGNPAFSSSKFSGPWSGTGGAAGIQGLNVGWNSGEASGFSGEANFVCNRGSGTGGFTFRCINANNTSSGPVTTISYDGSMYVPGRLTSAGDVHVGGSFIDTSGNINGSMWGGYLSNYLSSFYLTIGNLANNIAQMGTGGIGTYAFLVNTSGSTVAAGQNLSSGLSYASTTSNGGASTDGGTWRAMGFGVNNGATLWLRVA
Physico‐chemical
properties
protein length:694 AA
molecular weight: 71725,34270 Da
isoelectric point:5,51329
aromaticity:0,08357
hydropathy:-0,10173

Domains

Domains [InterPro]
DC_0043
STR
1–233
DC_0043 cd19958 G3DSA:6.20.70.20 DC_1233
DC_2101
STR
209–504
DC_2101
AMR58143.1
1 694
Architecture
STR
RBD
STR 1-504 | RBD 585-694
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMR58143.1
1 694
Domain Start End Length (AA) Confidence
N-terminal 1 429 429 0,7536
Central domain 430 628 200 0,2361
C-terminal 629 694 65 0,9973
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-429
Central
430-628
C-terminal
629-694

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PsyM_KIL3b
[NCBI] 		1777068 Uroviricota > Caudoviricetes > Vandenendeviridae > Flaumdravirus > Flaumdravirus KIL4
Host Pseudomonas syringae pv. porri
[NCBI] 		83964 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMR58143.1 [NCBI]
Genbank nucleotide accession
KU130131.1 [NCBI]
CDS location
range 43080 -> 45164
strand +
CDS
ATGGACTTGATTAAATACGATATGACGAATATCTGGGCAGTGGCCGGGGACGTTGTTGCCCCTGAAGTCGCCAAAATTCGTCAAGGTTGGGGTGTAGAGGTTGTTCCTCGTCAATGGTGGAACTGGTTCGAAAATCGCCAAGACAACAACATTGCCTACATACTACAAAAAGGTATCCCTGAGTGGGATTCCACAACTGAGTACATCATTAATAAGAGCTATGTGCAGAGGAACGGTATCACTTACAAATGTACCCAAACTGGCACAAACTCTGACCCAGTTAGCTTGGTGGGTTGGGTTAAAGCTTTTGTGGAATCTACGCCTTACCTGGAAAAGGTTAAGAACACTCAGCTAGTAAATTCCAGCATTCCAGCGATTAACTCGTCTGGTGACGCATCTTACGCACTGTATGGAGAAGTGGGCCTACAATCTCTGGTTGCAAGTACACAGCTTCAGGGTAGAAATGCAATTCAAGCACAACAAGCCAGCTCTAATTTATCCGCCTTGTCTGGTGTAACTGCCTCTACAAACGGTCTGCCATACTTTACCAGCACTACTGCCATGGGGATTGCGACTCTTACATCGTTTGGTAGAAGTTTTATTTCTGCAAACGATAGTGCAAGTGCTAGGTCACTATTAGGTCTGGGCTCTTCTGCCACTTTGAATGTTGGGACTACAGCCAACACTGTTGCAGCGGGAGACGACCCTAGGATTACAGGTGCTATGCAGAGGGGCAACAACCTTGCAGATCTGCTCAACATAGGGTCAGCACGTGCTAATCTGGGCCTTGGTACTGCTGCAGTGCAGAATATAACAACAACGCCAACTGACACAACTGGCGGAAGACTACTAAAGGTTGGTGACTTTGGCATTGGTGCTATCTCTGGTATCAGTGTTCCTGATGCTAACGCTATTTCTGCCACTGGTGTCTATGCTATACAAAACAACACAACCAACTTACCTTCAGGTGTTGGCGCTGGTGGCACAATTTTCAATCAAATCTGGGACTCCAACTCTTCTCAACAAATACTGATGTTCGGTAGCAAGCTTTGGATTAGAACTAAAGCAACCTCTTGGGGGAATTGGCAAGAAGTTTATACAACTAGCAACAGCAACGCCCTAGCAAGTCAGGTTCAAGCTAGCCTGCAGCCAGCACTAGATCTAAAGGTTAACAGATCTGGAGATGCAATGACTGGATCTTTGACATTGCCTAGCATGGAAATTGGTTCTGGCAGCCAACAAGGCTATATAGACTTCCACTCTTCCAACACCAATAATGATTACGATTCTAGAATTGTCTCTAGTCTTGGTAACTCTACCACTGGTCAGGGTGCCCTTAACTACATTGCAGCCGGGGGTCACTATTTTACGGGCTTGATTAACGGGACAGCAACTGTTGCACAAAGCCTGACAGGTAATATTGGTATAGGTCAGGTCAACTCACTGCAGGCTCAGCTGGACGGTAAGATGTCTGTCTCTGGTGGTGGGAACCCAGCGTTTAGTTCTAGCAAATTTTCTGGTCCATGGTCTGGTACGGGCGGTGCTGCGGGAATACAAGGTCTTAACGTTGGTTGGAACTCAGGCGAAGCTAGTGGTTTCTCTGGAGAAGCTAACTTCGTGTGTAACCGTGGTAGCGGTACTGGTGGCTTTACTTTTAGGTGTATTAATGCTAATAACACCTCCAGCGGCCCAGTAACAACCATTAGCTACGATGGCTCCATGTACGTACCGGGTAGGCTCACATCGGCAGGTGATGTTCACGTGGGCGGGAGTTTTATAGACACCAGTGGTAATATCAATGGATCAATGTGGGGAGGTTATCTAAGTAACTACCTGTCCTCATTTTACTTGACCATTGGAAACTTAGCAAACAATATAGCTCAAATGGGCACTGGTGGTATAGGAACTTACGCATTTTTGGTTAACACGTCAGGCTCCACTGTTGCAGCAGGTCAAAATCTATCTTCAGGCTTAAGCTATGCCTCTACCACTAGTAATGGTGGCGCGTCTACCGATGGTGGTACTTGGAGAGCCATGGGCTTTGGTGTAAATAATGGTGCAACCCTCTGGCTTCGTGTAGCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
913f1cfc69744f54687a6c7ab956484e0fe17f5390ce47924667c373c06a343a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6752
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50