Protein

View in Explore
Genbank accession
AMM43714.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSKKIIGDMSVQRNAQSNGRNTIRDVNNIAADVNGNINLPYYNKEYINKVMSTIPLSRIGTMDYLPMNINGSFEGSSNYIGKGVYPILLENDGTLVYLRPGTNGSTFGYYYCYVSNARTVLNLAPVVTNEKFTPTNFTSSHTLDSFISTDASELLMMRTNDGTNDTYTLSLTNGTMNSVAHQNLEFPASTITGTDPQYAMVVDNLIYIFCLDGYSNTSEMAISVYTLPKNNIISGTFTALTKVTGFSGVNLFGTSISASPNIKLAPMYFSNTPSDNSLYCVPTGNVYRGFSSFWGNNEGTLHAERNDRLIRIAFVHAAEATTQQSNTRSLSAISLVLDTSNKKYTLDNTNTGQVTITTNPTTGAITWNNPYSANMENYSGLSVNGSLNRVPTYATTSDGVQFTSTARHDSSPEHYISRCKINNFVSRYNAWNVTTRSVNSMLLNIVNPVFGSVIGENLIHPTIISSSKILMHCSGTYNNNITDYNTNVYTTLSGNPDYVYKSVSTGGTINGFKPSEERVILNNPDYRYTGCVTIMNQDGSTKVYGSSFVQDINKFSALEMNQNDFSYSQQITMNNTLLNNLKQDVMDSVTLPYPVLQSYIVLYYVPDNSYSKSYAVVTMLFDAPTGTANSYHILSEVDVTLSSNSVTAYNILSSYLINRNIVARSINTGLIERMGGMIIAKYQEFTYVGIPTLFAVNTSAGNFSSLICKVDNSTKMIKSTPKMISTAYNSSTANSYQVGVIPKLGFGLFENGAITDIKTKLVFKNYGTTEAQFDAMVANPASNPLSRIVIAAQDVAEGFIIYFTQRVPAFIQGNYFEMPITSINLNDITSNPSNKTFYLYITIVEGEAVYQISESLLSEELYRVYIGTIVTGQSAITSISTEKVTRFLNYRTSTTKRGSAIPTSTGVPSGTGTRWH
Physico‐chemical
properties
protein length:916 AA
molecular weight: 100656,80820 Da
isoelectric point:6,39816
aromaticity:0,10371
hydropathy:-0,16910

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMM43714.1
1 916
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,8962
Central domain 58 309 253 0,6422
C-terminal 310 916 606 0,6461
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-309
C-terminal
310-916

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PcaM_CBB
[NCBI] 		2772511 Uroviricota > Caudoviricetes > Mimasvirus >
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMM43714.1 [NCBI]
Genbank nucleotide accession
KU574722 [NCBI]
CDS location
range 82083 -> 84833
strand +
CDS
ATGTCTAAAAAAATCATAGGTGATATGAGCGTTCAGAGGAACGCTCAATCAAATGGTAGAAACACAATTCGTGATGTTAATAATATAGCCGCTGATGTTAACGGTAATATTAATCTACCATATTATAACAAAGAATACATCAATAAAGTAATGTCAACAATCCCACTATCTCGTATTGGAACAATGGATTACCTACCAATGAATATAAATGGTTCATTTGAAGGTTCTAGTAACTATATTGGGAAAGGGGTATATCCTATTTTATTAGAGAATGATGGTACATTGGTTTATCTTCGTCCGGGTACAAACGGAAGTACATTTGGATATTATTATTGCTATGTTTCTAATGCAAGAACCGTACTTAACTTAGCTCCAGTTGTGACTAATGAAAAATTTACACCAACAAATTTTACATCATCACACACCTTAGACTCTTTCATAAGTACAGATGCTTCTGAATTATTAATGATGCGTACAAATGATGGAACAAACGATACTTATACATTATCATTAACTAACGGAACGATGAATAGCGTTGCACATCAGAATTTAGAGTTCCCAGCAAGCACAATAACTGGTACTGATCCACAATATGCAATGGTTGTTGATAATTTAATTTATATATTTTGTTTAGATGGATATAGTAACACTAGTGAAATGGCTATATCAGTATACACTTTACCAAAAAATAATATCATATCTGGAACCTTTACTGCATTGACTAAGGTAACAGGATTCAGTGGAGTGAATTTATTTGGTACTAGCATCAGTGCTTCTCCAAATATAAAATTAGCTCCTATGTATTTTAGTAATACACCATCAGATAATTCATTGTATTGCGTACCAACTGGTAATGTATATAGAGGGTTCTCTTCATTTTGGGGAAATAATGAAGGTACACTTCATGCTGAACGAAATGATAGATTAATACGAATTGCATTTGTCCATGCAGCAGAAGCGACAACACAGCAATCAAACACACGTTCGTTGTCGGCAATAAGCTTAGTACTGGACACCAGCAACAAAAAATATACACTAGACAATACAAATACGGGTCAGGTTACAATAACAACCAATCCCACTACTGGTGCAATAACCTGGAATAATCCGTACTCCGCTAATATGGAAAATTACTCTGGTCTTTCAGTAAATGGTTCACTAAACCGTGTACCAACTTACGCGACAACTTCAGATGGTGTTCAGTTCACATCTACTGCAAGACATGATTCATCACCAGAACACTATATAAGCAGATGTAAAATTAATAATTTTGTTTCACGATATAATGCCTGGAACGTTACTACTCGTTCAGTAAATTCGATGTTGCTTAATATTGTAAATCCAGTGTTTGGTTCTGTAATTGGTGAGAACTTGATTCACCCAACAATTATCTCAAGTTCTAAAATATTAATGCATTGCAGTGGTACATATAATAATAATATCACAGATTATAACACAAACGTTTATACAACATTATCTGGAAATCCTGATTATGTTTATAAATCAGTATCTACAGGTGGCACAATAAATGGATTTAAACCAAGTGAAGAACGTGTCATTTTAAATAATCCAGACTATAGATATACTGGTTGTGTAACTATTATGAATCAAGATGGAAGTACTAAAGTGTATGGTTCATCATTTGTTCAAGATATTAATAAATTCTCTGCGTTAGAGATGAACCAGAATGATTTTTCATACTCTCAACAGATTACGATGAATAATACATTACTTAATAATTTAAAACAAGATGTAATGGATTCAGTTACGTTACCGTATCCTGTACTACAAAGTTATATCGTTTTATATTATGTACCAGATAACTCTTACTCAAAAAGTTATGCTGTTGTTACTATGTTATTTGACGCACCTACTGGTACTGCTAACTCATATCACATACTGTCAGAAGTTGATGTTACATTAAGTTCGAATTCTGTTACTGCGTACAATATTTTATCTAGTTACTTAATTAACCGAAATATTGTTGCAAGATCTATTAATACAGGTTTAATTGAACGTATGGGTGGTATGATAATTGCTAAATATCAAGAATTTACATACGTTGGAATTCCGACACTATTTGCAGTGAATACATCGGCGGGTAATTTCTCATCTTTAATTTGTAAAGTTGATAATAGTACTAAAATGATTAAATCTACTCCAAAAATGATTTCAACTGCTTATAACTCAAGCACTGCAAATTCATATCAAGTCGGGGTAATTCCAAAGTTAGGTTTTGGATTATTTGAAAATGGTGCAATTACAGATATAAAAACCAAACTAGTATTCAAAAACTATGGAACAACAGAAGCACAATTTGATGCTATGGTGGCGAATCCGGCAAGCAATCCTCTGTCTAGAATAGTTATTGCTGCTCAAGATGTTGCGGAAGGATTTATTATATATTTCACACAACGTGTTCCTGCTTTTATACAAGGGAATTATTTTGAAATGCCAATAACATCCATTAATTTGAATGATATTACTTCTAATCCATCCAATAAAACTTTTTACTTGTATATTACGATTGTAGAAGGTGAGGCGGTATATCAGATTAGTGAGTCGTTGCTTTCTGAAGAATTATATCGTGTATATATTGGTACTATAGTTACTGGTCAATCGGCAATTACATCTATCAGTACTGAGAAAGTTACAAGGTTCTTGAACTATAGAACAAGCACGACTAAGCGTGGTTCTGCAATTCCTACGAGTACTGGCGTACCGTCAGGTACAGGCACTCGTTGGCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f02774b40b5e7e4a84f22946ae9ea507cad4a9ccd65c90915db0947ffa24a24b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4180
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50