Protein

View in Explore
Genbank accession
YP_010739089.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MATIVIPQRFAQRRDTTANWNSKDPVLWSGEVGILMDPGQAVKLKVGDGTKKWSELDFFASDGKPVQLRAADGFIQWNYVGDTSWINLVSLDSLRGADGDDGEDGQDGESAYEIAVDGGFIGTVPEWLASLKGEKGDTGDKGDAGNPGTPYARRIQHVADTDAGTFECDWSQYDEIRISLTATVVLSFTGAIDGQGCVLKLRQPPAGGCQVGLPGGVVRFNSLIQAYAVTQTGSRADKVGFVFDGEDARYDLVSIIPGI
Physico‐chemical
properties
protein length:259 AA
molecular weight: 27668,42920 Da
isoelectric point:4,43767
aromaticity:0,08880
hydropathy:-0,25135

Domains

Domains [InterPro]
DC_1473
STR
1–257
DC_1473
SSF69349
STR
9–144
SSF69349
IPR041352
ATT
13–50
IPR041352
YP_010739089.1
1 259
Architecture
STR
ATT
STR
STR 1-12 | ATT 13-50 | STR 51-257 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage vB_Xar_IVIA-DoCa6
[NCBI] 		2975533 Uroviricota > Caudoviricetes > Mesyanzhinovviridae > Bosavirus > Bosavirus Doca6
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010739089.1 [NCBI]
Genbank nucleotide accession
NC_073035.1 [NCBI]
CDS location
range 34857 -> 35636
strand +
CDS
ATGGCGACCATCGTAATACCGCAGAGGTTTGCCCAGCGCCGTGACACCACGGCCAACTGGAACAGTAAGGACCCCGTCCTCTGGAGCGGCGAGGTCGGCATCCTCATGGACCCGGGCCAGGCCGTCAAGCTGAAGGTCGGCGATGGCACGAAGAAGTGGAGCGAGCTCGACTTCTTCGCCTCCGACGGCAAGCCCGTGCAGCTGCGCGCGGCCGACGGGTTCATCCAGTGGAACTACGTGGGCGACACCTCCTGGATCAACCTGGTGTCGCTGGACAGCCTCAGGGGCGCTGACGGCGACGACGGCGAGGACGGGCAGGACGGCGAGAGCGCCTACGAGATCGCCGTCGACGGGGGCTTCATCGGCACCGTGCCGGAGTGGCTGGCCTCGCTGAAGGGCGAGAAGGGCGACACCGGCGACAAGGGCGACGCCGGCAACCCCGGCACGCCCTACGCCCGACGGATCCAGCACGTGGCCGACACCGACGCCGGGACTTTCGAGTGCGACTGGAGCCAGTACGACGAGATCCGCATCTCCCTGACCGCCACCGTGGTCCTGAGCTTCACCGGGGCGATCGACGGCCAGGGCTGCGTGCTGAAGCTGCGCCAGCCGCCGGCCGGCGGGTGCCAGGTCGGGCTGCCCGGGGGCGTGGTCCGGTTCAACTCCCTGATCCAGGCGTACGCCGTGACCCAGACCGGGTCCAGGGCGGACAAGGTTGGTTTCGTCTTCGACGGCGAAGACGCACGATACGACCTGGTCTCCATTATTCCCGGGATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c84daf62027ea207959fe6ff81503e5180e02b02a50cf3223c001ee6ab3d2977
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8778
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of new lytic phages for the biological control of phytopathogenic Xanthomonas spp. Domingo-Calap,M.L., Bernabeu-Gimeno,M., Aure,C.M., Marco-Noales,E. and Domingo-Calap,P. 2022-12-21 — GenBank