Protein

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Genbank accession
AGG54647.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,73
Protein sequence
MANITQTIPALTAGISQQPDEQKIPGQVKDMVNALPDVTQGLTKRPAGKFVASLSDGSNNSTADGRWFHYYRDENEQYIGQVAKNGVIRMWDCQTGAEKTVVNGIGNNTYLTHTNDEDIQTLTLNDFTYINNRSITTEMDTTTEPLGNFGKEIFVELKKISYAKQYALNVFDNTNTSTVSTATRIKVTLVNSSNNYCDSNNKMRTHATRGDGNNARCGEPAGDGRDSFAPNVATRIFSVSTGTTLVDEGAQGGTLANGNQSDTNYSYTVNIFNASNQGSQTGRNNLYFRIATTGQSVPFGSGSNVTYQARYTTTHDLLHGGEGWQTGDYFYVFMMDAYYKITIEATSESIVQANLGLVRPNPTPFDTETTITAESILGDIRTSLIASGNFSNSDITTIGTGLHIKRTSAFNASTPVGELLNVVASKVNDVGDLPSQCKHGMVVEVVNSVADEDNHFVKFFGNNDKDGEGTWEECAKPGRKIRLKRSKMPVILIRTADGNFRLSELDGSTYTISGTSYPVPQWDDALVGDDVTNPEPSFIGKGISKMLFFRNRFAILADENIVLSRPGDFTNFFAKSAIQLIASDPIDIAASSEYPAIIYDGIQVNTGLLLFSKNQQFMLTTDSDVFSPTTAKINALSTYNFNFATNPISLGTTVGFLDNAGKFSRFFEMAQVQREGEPEVIEQSAVVSRLFEKDLKLISNSRENSVIFFSEEGTSTLYGYRYFDNIRERKLAAWFRWTLTGTIQYHCMQDDNLYVVVRNNNKDQLLKYSIKMDANTFAIAENRVHLDHLMSVTTGSNTYNATTNKTTFAKPTGIESTNQLAAYDVDSGDQLGRYGLITINGSNLEIDGNWSSQTFLIGYQFTMQLDLPTIYYVTREGENFRADTRSSLVLHRAKLGFGPVGLYETTLNRTGRVAYTELFELTGADQYVANTSSVVDDNIIREVPIFDANTNVALTIKSTHPAPATIHNLTWEGAYNTKFYQRV
Physico‐chemical
properties
protein length:983 AA
molecular weight: 108559,39810 Da
isoelectric point:5,16242
aromaticity:0,09969
hydropathy:-0,36704

Domains

Domains [InterPro]
IPR058003
TTP
1–187
IPR058003 DC_1232
DC_0173
ATT
1–209
DC_0173 IPR058003
IPR058003
TTP
335–980
IPR058003
AGG54647.1
1 983
Architecture
ATT
STR
TTP
ATT 1-209 | STR 210-359 | TTP 360-980 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54647.1
1 983
Domain Start End Length (AA) Confidence
N-terminal 1 286 286 0,4656
Central domain 287 488 203 0,2429
C-terminal 489 983 494 0,4282
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-286
Central
287-488
C-terminal
489-983

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-GSP1
[NCBI] 		382262 Uroviricota > Caudoviricetes > Autographivirales > Lingvirus PGSP1 >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54647.1 [NCBI]
Genbank nucleotide accession
HQ332140 [NCBI]
CDS location
range 35188 -> 38139
strand -
CDS
ATGGCAAACATTACACAAACTATTCCAGCGTTAACGGCTGGCATTTCACAACAACCTGACGAGCAAAAGATTCCCGGTCAGGTGAAAGACATGGTGAACGCCCTACCTGACGTTACACAAGGACTAACAAAAAGACCGGCTGGAAAGTTTGTGGCATCTTTATCTGATGGTTCAAATAATTCTACAGCAGACGGTAGATGGTTTCATTACTATCGTGACGAAAACGAACAATACATAGGACAGGTTGCAAAGAATGGTGTTATTAGAATGTGGGACTGCCAAACAGGAGCAGAAAAAACTGTTGTAAATGGCATAGGTAATAACACATATTTAACACATACTAACGACGAAGATATACAAACACTTACTCTTAACGACTTTACTTACATAAATAATAGGTCCATTACTACAGAAATGGATACTACTACAGAACCTCTTGGAAATTTTGGCAAAGAAATTTTTGTCGAGTTGAAAAAGATTTCTTACGCAAAACAGTATGCGTTAAATGTTTTTGATAACACTAACACTTCTACAGTTTCTACAGCTACACGTATTAAAGTAACTCTTGTAAACTCTAGTAATAATTACTGTGACTCTAATAATAAAATGAGAACTCATGCAACTAGAGGTGATGGTAATAATGCTAGATGCGGAGAGCCTGCTGGAGATGGTAGAGATTCATTTGCACCTAATGTTGCTACTAGAATATTTAGTGTAAGTACTGGTACGACTCTTGTTGACGAAGGTGCTCAAGGTGGTACATTAGCTAATGGTAATCAGTCTGATACTAACTATAGTTACACAGTTAATATATTTAATGCTTCTAATCAGGGCAGTCAAACTGGTAGAAATAATCTATACTTTCGTATAGCTACAACTGGTCAGTCAGTTCCTTTTGGTTCTGGAAGTAATGTTACGTATCAAGCTAGATATACAACTACACATGATTTATTACATGGTGGAGAAGGATGGCAAACAGGCGATTACTTCTATGTATTTATGATGGATGCTTACTATAAAATAACTATTGAAGCAACCAGTGAATCTATTGTACAAGCTAACCTTGGGTTAGTTAGACCTAACCCTACACCATTTGATACAGAAACTACTATTACTGCTGAAAGTATCCTTGGAGATATTAGAACTTCATTAATAGCAAGTGGTAATTTTTCTAACTCAGATATAACAACTATTGGTACAGGACTGCATATAAAACGAACCTCCGCCTTTAACGCTTCTACGCCCGTAGGAGAGCTGTTAAACGTCGTTGCTAGTAAAGTTAACGATGTAGGTGATTTACCCTCTCAGTGCAAGCACGGAATGGTTGTAGAGGTAGTTAATAGTGTTGCTGATGAGGATAATCATTTTGTTAAGTTTTTTGGTAATAACGACAAAGATGGTGAAGGTACATGGGAAGAGTGTGCTAAACCGGGAAGAAAAATTAGATTAAAAAGATCTAAGATGCCAGTAATTCTTATTAGAACTGCTGACGGTAATTTTAGATTATCTGAACTAGATGGTTCTACTTACACTATTTCAGGTACATCTTACCCAGTACCACAATGGGACGATGCCTTAGTAGGTGATGACGTAACTAACCCTGAACCTTCATTTATAGGTAAAGGTATTAGTAAGATGTTGTTTTTTAGAAACAGATTTGCAATACTTGCTGATGAAAATATAGTGTTATCTCGTCCGGGAGACTTTACTAACTTTTTTGCTAAGTCAGCTATACAACTTATAGCTAGTGACCCGATAGACATAGCAGCTAGTTCAGAGTATCCTGCTATTATTTATGATGGCATACAGGTAAACACAGGTTTATTATTATTTTCTAAAAATCAACAATTCATGCTCACTACAGATAGTGACGTGTTCAGCCCAACAACAGCTAAGATCAATGCTCTTTCTACTTACAACTTTAACTTTGCTACAAATCCTATCTCTCTTGGTACTACTGTCGGGTTCTTAGATAATGCCGGTAAGTTCTCAAGATTTTTTGAAATGGCACAAGTACAGAGAGAAGGTGAACCAGAGGTTATAGAACAGAGTGCAGTAGTTTCTAGGTTATTTGAAAAAGATTTAAAACTTATATCTAACTCTAGAGAAAACTCAGTTATATTTTTTAGTGAAGAAGGAACATCTACACTGTACGGATATAGATACTTTGATAATATTAGAGAAAGAAAATTAGCAGCTTGGTTTAGGTGGACGTTGACTGGAACAATTCAATACCACTGTATGCAAGATGATAACTTATATGTAGTTGTTCGTAATAATAACAAAGATCAGTTACTTAAATACAGTATTAAAATGGATGCTAATACTTTTGCTATTGCAGAAAATAGAGTTCATTTAGATCATTTAATGTCAGTAACAACAGGATCTAACACTTACAACGCTACAACTAATAAAACAACATTTGCTAAACCTACTGGTATAGAAAGCACAAATCAATTAGCAGCTTATGATGTTGATTCTGGAGATCAATTAGGTAGATATGGACTAATAACTATCAATGGTAGTAACTTAGAAATAGATGGCAACTGGTCTAGTCAAACATTTTTAATTGGTTATCAGTTTACTATGCAACTTGATCTACCTACTATTTACTATGTAACTAGAGAAGGAGAAAATTTTAGAGCTGATACTAGATCTAGTCTTGTATTACACAGAGCTAAGTTAGGATTTGGTCCAGTAGGTTTATACGAAACTACACTAAACAGAACAGGTAGAGTTGCATATACAGAACTGTTTGAATTAACAGGTGCTGACCAATACGTAGCTAACACTTCATCAGTAGTAGATGATAATATAATTAGAGAAGTACCTATATTTGATGCTAATACAAACGTAGCATTAACAATTAAATCAACACACCCAGCTCCAGCTACTATTCACAACCTGACATGGGAAGGAGCTTACAATACTAAATTTTATCAACGTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
826647969fa456f1bff3b7a68fcf4c75f1a8bbd9a6465d976bc8e8591d95b1fc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7663
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-GSP1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank