Protein

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Genbank accession
APD18154.1 [GenBank]
Protein name
cycloalternan hydrolase / pectin lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MPLTYQVEVSDGVRVSYPLQMDYLNKSDIYVYKGDHADYAQQLSYEWVNEWTIKLTKVASELPDGSRFYIRRVMPRTDLIHKFEDKSINAGGIDRQNYHSLYLLQEYMDGFTQLNGIWAAQGNIDMAGFKVINSGEPKDNLDLLRVIDINKFADFTGIIPAYIEHVGDGVRKEFQAPNTNVTNVHMTNVFAGTKAFKPGLDYTLEGGVIKFKTYVPAAGEELYISVFNPVIYDVPPVGNTNDIIFMSTYVKDPMNRDQVNSAVSIINALMKDGRTIVFDGIYVWPDVSFKTGKNTVTFRGGGFKRLNNRGTEYPIWLEGEGCGFYEGFLDGGTQVIPVFGQQGIYVREGINTRITNNIFKNIGDAPIRYARSAGSGVGLTTSTLGLVIANNIFANCTQVTSNNTGAIGVNIVGNLFRKAAVKVTQRVHPDQNPIKAATLIQGNLFMEMGFLDGTGQACISGQGFENLSIKSNVFHQTSEATVFECYFNASTFDPQGRKIPNLNLEFVDNTCVCYTGYSPIRLWAEGDADGSAVDVTGSVFDLSRNKFDLKVKDTAEETERSGLIWVTATGDPATSPRVCEQLYVNDNRVVGEVPRCLVTLGNPTVPRFKDGILEVRRNTGKFRRALVTGIIAADTGCRVSITDNQFESLGVYESVTSNAPGQGVFDVSRNEVQLATRDNITGSFGAIMNNNLKINEQRYLDNKFFAPKVVGAQTCDYLIWLWVHERNLKPANAALYIGGNILDAKGSYAGTAPRPFYLNAATDGVKFDKLFAWSSWMTENDGRPADSANNLYKVQDLLVRNTNLNSDFYKVRYREAAITGKGMDGMLWQKLEEWSDGTVVMRGRDTKSYAAPWSGNGYLIEDIPAGIDLNKVWTMFNSSGSGAITTGGLAPQVNRKAFRTWSANVGSITTEFVGAIYNYEVRYNKNEIEGK
Physico‐chemical
properties
protein length:931 AA
molecular weight: 103105,05090 Da
isoelectric point:5,76270
aromaticity:0,10956
hydropathy:-0,26133

Domains

Domains [InterPro]
DC_1930
STR
1–924
DC_1930
IPR005604
ATT
4–112
IPR005604 IPR011050
APD18154.1
1 931
Architecture
ATT
STR
ATT 1-112 | STR 113-924 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APD18154.1
1 931
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9934
Central domain 262 798 538 0,9825
C-terminal 799 931 132 0,9806
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-798
C-terminal
799-931

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF7
[NCBI] 		1292086 Uroviricota > Caudoviricetes > Autographivirales > Tawavirus JSF7 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD18154.1 [NCBI]
Genbank nucleotide accession
KY065149 [NCBI]
CDS location
range 21866 -> 24661
strand -
CDS
ATGCCTCTCACTTATCAAGTGGAGGTCAGCGACGGTGTTCGTGTTTCTTATCCGTTACAGATGGACTACTTGAATAAGAGTGACATCTATGTGTACAAAGGCGACCACGCTGATTACGCTCAGCAGCTAAGCTATGAGTGGGTCAACGAGTGGACTATCAAGCTCACTAAGGTCGCCTCAGAGTTACCCGATGGCTCACGCTTCTACATTAGACGCGTGATGCCTCGGACAGACCTGATACACAAGTTTGAGGACAAGAGCATTAACGCTGGCGGTATTGACCGACAGAACTACCACTCACTGTACTTGCTGCAAGAGTACATGGATGGGTTTACGCAGCTCAATGGCATATGGGCAGCGCAAGGCAACATAGACATGGCAGGATTCAAGGTAATCAATAGCGGTGAGCCAAAAGATAACCTTGACCTACTACGTGTTATAGACATCAACAAGTTTGCAGACTTCACTGGTATTATACCAGCGTACATAGAGCATGTAGGTGACGGTGTGCGCAAGGAGTTCCAAGCTCCTAACACTAACGTGACAAACGTGCACATGACAAACGTGTTTGCAGGCACAAAAGCGTTTAAGCCGGGTCTTGATTACACGCTTGAAGGTGGTGTCATAAAATTCAAAACCTACGTCCCTGCGGCCGGAGAGGAGCTGTATATCAGCGTGTTCAATCCGGTAATCTATGATGTGCCACCAGTGGGTAACACGAATGACATCATATTCATGTCCACATACGTGAAAGACCCAATGAACCGCGACCAAGTCAACAGTGCAGTAAGCATCATTAATGCACTGATGAAAGACGGGCGCACAATAGTGTTCGACGGTATCTACGTGTGGCCTGATGTGTCGTTCAAGACTGGTAAGAACACAGTAACCTTTCGTGGCGGCGGCTTCAAGCGCTTGAATAACAGAGGGACAGAGTACCCTATCTGGCTGGAAGGCGAAGGGTGTGGATTCTACGAAGGGTTCCTCGATGGAGGAACCCAAGTAATACCAGTGTTCGGTCAGCAAGGTATCTATGTGCGTGAGGGTATCAACACACGAATCACGAACAATATCTTCAAGAACATAGGCGACGCACCCATACGATATGCCCGTAGTGCTGGTAGCGGTGTCGGTTTGACAACCTCCACCTTAGGCTTGGTAATAGCAAACAACATCTTCGCAAACTGCACACAGGTAACGTCTAATAACACAGGTGCTATCGGTGTAAATATAGTGGGTAACTTGTTCCGTAAAGCAGCAGTGAAGGTGACACAGCGTGTGCATCCAGACCAGAACCCTATCAAAGCAGCAACACTGATACAAGGTAACTTGTTCATGGAGATGGGCTTTTTAGACGGGACTGGGCAAGCGTGCATATCTGGTCAAGGGTTCGAGAACCTATCTATCAAGTCTAACGTGTTCCACCAGACGTCAGAAGCAACAGTGTTCGAATGTTACTTCAACGCAAGCACATTCGACCCACAAGGTAGAAAGATACCAAACTTGAACCTTGAGTTTGTGGATAACACGTGCGTATGCTACACAGGCTACAGCCCAATACGCCTATGGGCAGAAGGGGATGCTGATGGTAGTGCAGTAGACGTTACAGGCTCTGTATTCGACTTGTCCCGCAATAAGTTTGACTTGAAGGTGAAAGATACAGCAGAAGAGACAGAAAGGTCTGGCTTGATATGGGTGACAGCTACTGGCGACCCTGCAACTAGCCCTAGGGTGTGTGAGCAGCTGTATGTGAACGACAATCGTGTGGTAGGTGAAGTGCCTCGTTGTCTAGTTACGCTCGGCAACCCTACGGTACCTCGCTTCAAAGATGGTATCCTTGAGGTGAGACGTAACACAGGTAAGTTCAGACGCGCACTAGTCACGGGTATCATAGCAGCTGATACAGGATGCCGAGTTAGTATTACGGACAACCAGTTCGAGTCTTTAGGAGTGTACGAAAGCGTGACAAGCAATGCGCCCGGTCAAGGTGTGTTCGATGTGTCGCGTAATGAAGTGCAACTAGCAACCAGAGATAACATCACTGGTTCGTTTGGTGCAATCATGAACAACAACCTAAAGATAAACGAGCAGCGCTACCTAGACAACAAGTTCTTTGCACCTAAGGTGGTCGGGGCACAGACTTGTGACTATTTGATATGGTTGTGGGTGCACGAAAGAAACTTGAAGCCTGCAAACGCAGCTTTATACATCGGCGGTAACATACTCGATGCCAAGGGTAGCTACGCAGGTACAGCACCAAGACCGTTCTACTTAAACGCAGCTACAGACGGAGTCAAGTTTGACAAGCTATTCGCTTGGTCTAGCTGGATGACTGAGAATGATGGGCGACCAGCAGACTCAGCTAACAACCTGTACAAAGTGCAAGACTTGCTAGTTCGCAATACAAACCTGAATAGCGACTTTTACAAAGTGCGCTACAGGGAAGCTGCTATAACAGGTAAGGGTATGGATGGTATGCTGTGGCAGAAACTCGAAGAATGGAGTGACGGCACAGTAGTCATGCGCGGTAGAGACACAAAGTCGTATGCAGCGCCGTGGTCTGGCAACGGATACTTAATTGAAGATATACCAGCAGGTATTGACCTCAACAAAGTGTGGACTATGTTCAACTCGTCCGGTAGTGGGGCTATAACAACAGGTGGTCTAGCACCTCAAGTGAACCGAAAAGCTTTCCGAACATGGAGCGCTAACGTAGGTTCAATTACAACGGAGTTCGTAGGGGCGATATACAACTACGAAGTGCGATACAACAAGAACGAGATAGAGGGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2896859b189db1119cf0fb3de711a8364fa04a758bfa886313c6a52886693717
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6617
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50