Protein

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Genbank accession
YP_009811200.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MKLGNMTLMAGAQIFNLRGEKRATDPTLGSLVANQEAWIWYNTTDKVYKYFDGTAIKTFGEGSSPDLSGYVKADGTTAMTGVLELSSADQSAAADVAAVSKGYVGGLLARKLSVSAEGTLAANLSAGGFGISDLAAPVNGTDAARKIDIENALAGLNWQQDVDGMQVDGVLQPQKVEGKRYVLTDVANLHADFGTIDGVVDDVIVEYHTDAFEIVFTPTQDRAEGAIAWNSDTNQYVRFDGNAWANFGGMASVTAGLGLNLNGNELSVKVNAAGGVSVDSDGLNVKLDGASLSKSANGVRVANGGVGFAQLANNIVGSGLTRNTETSTIDLDITAVKSAGFIDADGGTIDHLIFSGEMQEVDGAAATRKFVVDSVATSAKTYVQDNTGGTGEGSTSYTFTHNAGQRFGTVVVLDSTGKQIIPDEITLVDANSLTVTLAQAMKVYIVFVAGANQFVVTP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 47531,28070 Da
isoelectric point:4,45927
aromaticity:0,07205
hydropathy:0,01070

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811200.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 435 435 0,8703
Central domain 436 447 13 0,0077
C-terminal 448 458 10 0,9863
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-435
Central
436-447
C-terminal
448-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811200.1 [NCBI]
Genbank nucleotide accession
NC_048053 [NCBI]
CDS location
range 52478 -> 53854
strand -
CDS
ATGAAACTAGGCAATATGACGTTGATGGCGGGTGCTCAGATTTTTAACCTTCGTGGTGAAAAACGTGCAACTGACCCAACGCTCGGTTCGCTGGTTGCAAATCAGGAAGCATGGATCTGGTACAACACTACCGATAAGGTATACAAATATTTTGATGGCACTGCGATCAAAACGTTTGGTGAAGGTAGTTCTCCGGATCTGTCTGGCTACGTGAAAGCAGACGGCACCACAGCAATGACTGGCGTACTTGAATTAAGTTCTGCTGATCAATCCGCTGCGGCTGATGTTGCGGCTGTAAGTAAAGGTTACGTTGGCGGTTTGCTCGCACGCAAACTTTCTGTTAGCGCAGAAGGTACGCTTGCGGCAAATCTTTCTGCTGGCGGTTTCGGTATTAGCGATCTTGCTGCGCCTGTTAATGGCACCGATGCAGCTCGTAAGATTGATATCGAAAATGCTCTTGCTGGTTTGAACTGGCAGCAAGACGTTGACGGGATGCAAGTTGATGGTGTCCTTCAACCGCAAAAAGTCGAAGGCAAGCGTTATGTTCTGACTGATGTTGCGAACCTGCACGCAGATTTCGGAACTATCGATGGCGTTGTTGATGATGTGATTGTTGAATATCACACTGACGCTTTTGAAATTGTCTTTACTCCTACTCAAGATCGCGCGGAAGGTGCAATTGCGTGGAACTCCGATACCAATCAATACGTTCGTTTTGATGGTAACGCGTGGGCGAACTTCGGCGGTATGGCAAGCGTAACTGCTGGCCTCGGTTTGAATCTGAATGGCAATGAACTGTCTGTAAAAGTTAACGCTGCTGGCGGTGTTTCTGTTGATAGCGATGGCCTGAACGTTAAGCTGGATGGCGCAAGCCTTTCTAAAAGCGCTAACGGTGTTCGCGTTGCTAACGGCGGTGTTGGTTTTGCGCAACTGGCAAACAACATTGTTGGTTCCGGTTTAACGCGCAATACTGAAACGTCAACTATCGATCTGGATATTACCGCTGTTAAATCTGCTGGCTTCATTGATGCAGACGGCGGCACTATTGATCATTTGATCTTCTCCGGCGAAATGCAGGAAGTTGACGGCGCGGCAGCTACTCGTAAGTTTGTTGTTGATAGCGTTGCAACTAGCGCAAAAACTTACGTTCAGGATAACACTGGCGGCACTGGTGAGGGTTCAACCTCTTACACCTTTACGCACAATGCTGGTCAGCGTTTCGGTACTGTTGTTGTTCTGGATTCAACGGGTAAACAAATCATTCCGGACGAAATCACTCTGGTTGATGCTAACAGCCTAACTGTAACTCTTGCACAGGCGATGAAAGTTTACATCGTGTTTGTTGCAGGTGCTAACCAGTTTGTTGTTACTCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fdbfc9b0d8b3773759a77508da8ab4196206108aa7f961b696c8b61f7a4354ff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7373
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank