Protein

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Genbank accession
UYE93513.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIQNHPSWSPFTQYAGLDRTSLDVSLDAIPQPRSGSPGPDILSQSNGVVNVKNYVAYFADGNFYIRAENKTIDNWDEPILLGSIMEVPNTISLAFDQLGRPQIFYESNGKIKLFGYDPTSQTITSRFICNGTTPVAAMDYPKDTSRASCDINVCYVVNNLAKFRIQREKYEIEYSVSDVSPGDDLKLIEVGFRRDRRFGLNFTYKPKSTGGGGTPPDEPGDYEIGTWKFNDARGDGFWSFSEVDPKTSGIVWDNGEAQASMILGLNINGNIPGQTTLAGNTWSAVIPNDPEYGPYVWIGVGFGMYGNRTDPAKGFGDYYDVYFEFLCKGKLVKLKAQFDPQDPYYGYAIFLCDNDTNEPASEALVPAVFGDWRIFSDQSTDQFLPGGYETERYSLNLWMDEFANTWFPNDFATHSDMKQLGEFEATVRAIHKAGTQPNIVGKMKFVITGAT
Physico‐chemical
properties
protein length:451 AA
molecular weight: 50294,46420 Da
isoelectric point:4,62206
aromaticity:0,13525
hydropathy:-0,41619

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYE93513.1
1 451
Domain Start End Length (AA) Confidence
N-terminal 1 219 219 0,5335
Central domain 220 424 206 0,4773
C-terminal 425 451 26 0,7430
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-219
Central
220-424
C-terminal
425-451

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage FishSpeaker
[NCBI] 		2985553 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella oneidensis MR-1
[NCBI] 		211586 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella > Shewanella oneidensis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYE93513.1 [NCBI]
Genbank nucleotide accession
OP589283.1 [NCBI]
CDS location
range 114657 -> 116012
strand +
CDS
ATGATACAGAATCATCCATCCTGGTCACCTTTTACTCAGTACGCTGGTTTGGATAGAACATCATTGGACGTTTCACTGGATGCTATACCACAACCAAGGTCAGGAAGTCCGGGACCTGACATACTCAGTCAATCTAACGGAGTGGTTAACGTTAAAAACTATGTTGCTTATTTTGCCGATGGTAATTTTTACATTCGCGCAGAAAATAAAACAATTGATAACTGGGACGAACCAATATTGCTGGGAAGCATTATGGAAGTCCCTAACACCATCTCCCTTGCGTTTGACCAATTAGGTCGCCCTCAGATTTTCTATGAGTCTAATGGCAAAATTAAACTATTTGGTTATGACCCAACTTCCCAGACAATTACGTCACGTTTCATTTGTAATGGGACTACCCCTGTAGCTGCAATGGATTATCCTAAAGATACTTCCAGAGCAAGTTGCGATATCAACGTTTGTTATGTGGTGAATAATCTTGCTAAGTTTCGCATTCAACGTGAAAAATATGAGATTGAATATTCAGTCAGTGATGTTTCTCCCGGAGATGATCTTAAGCTGATTGAGGTGGGGTTTAGACGAGATAGACGTTTTGGTTTGAACTTTACTTACAAACCTAAGTCAACTGGGGGTGGAGGAACTCCTCCTGATGAACCGGGTGATTATGAAATCGGTACATGGAAGTTTAATGATGCACGTGGAGATGGGTTCTGGTCGTTTAGTGAAGTAGACCCTAAAACATCCGGTATTGTTTGGGATAACGGAGAAGCACAAGCTTCCATGATACTTGGTTTAAACATCAATGGAAACATCCCAGGTCAAACCACGTTAGCTGGAAACACATGGTCGGCTGTAATACCTAATGACCCAGAATACGGCCCTTACGTTTGGATTGGTGTTGGGTTTGGAATGTACGGTAATCGTACTGACCCTGCTAAAGGGTTTGGAGATTATTATGATGTGTATTTCGAATTTCTGTGTAAGGGTAAACTGGTTAAATTAAAAGCCCAGTTTGACCCACAAGACCCTTATTATGGTTACGCTATCTTTTTGTGTGATAATGACACAAATGAACCCGCTTCTGAAGCACTGGTTCCCGCTGTATTCGGTGATTGGAGGATTTTTAGTGATCAGTCCACTGACCAATTTTTACCCGGTGGATATGAAACTGAACGCTATTCTCTCAATCTCTGGATGGATGAATTTGCAAACACGTGGTTCCCAAATGATTTTGCAACTCACTCAGATATGAAACAACTTGGTGAATTTGAGGCTACCGTTCGTGCTATTCATAAAGCAGGTACACAACCTAACATCGTGGGTAAAATGAAGTTTGTCATAACAGGTGCGACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8c92b4a532d38bac4a2be1b1063723e1768df4ae8afe5aa56b694bf613322538
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5136
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The outer-membrane cytochrome OmcA is essential for infection of Shewanella oneidensis by a zebrafish-associated bacteriophage Grenfell,A.W., Intile,P., McFarlane,J., Leung,D., Abdalla,K., Wold,M., Kees,E. and Gralnick,J. — — GenBank