Protein

View in Explore

Genbank accession

AFC22519.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence Phold

Probability 1,00

Evidence RBPdetect

Probability 0,90

Protein sequence

MDQKFFRVPFAQSGDRQTIPDATQTSGAVSFPSGWGGDYAKDPAVDANAKPVEREAMNAILYAITNAVRQYQTFGFPEYITPADNNGGAFSYSSGAVVRYRAAADQPFKSYVSIADNNTSVPGSDETKWQEFIYREATTQEITEGTSGTTVVSPRRLKERTDIIDGEIDEINDSLTRVGNLQVAQVSIDAQGSVVLNAPTDCVQILIIGHYTADAVESRDYWESKLSVNGAVVDTTPFYGYVTGSRGHGHHRRELLPFSQLVDMQLTAGDAINFEYSSNRGSSTTFTVFYIQGVSTDKPDHPTAIIISPGSSTINAGGQQQLTATVLPANVAADYPVTWSVSDPALGSVDSNGLYTANSGASGTQSVIASVSTGLASTATITQHVYLTNIDIGNPPANLIADRTYTVPITYSPSNYTEPVQTSSSDSTIATLSIDGTLTISSGGTATLTLTGASSGVTDSITITATEEVVPERYLQIAERLSEISTAGSAAQAAARSNLGLGGLATKDSLTAADVGAVPQASASLGTENLNTVTSPGRKFQSLTSNATLARNYPVALAGMLDVIRTTDEGIRQTFYPYNTTEVYHRYCVDVGANPIVFSTWAKSGGDYLEKSQNLQDVSDKPLARDNMGVGYTISTSEPPASAAGYAAGHIWYQV

Physico‐chemical properties

protein length:	655 AA
molecular weight:	69363,47330 Da
isoelectric point:	4,61057
aromaticity:	0,08092
hydropathy:	-0,21832

Domains

Domains [InterPro]

DC_1737
ATT
22–132

DC_1737 DC_1811 DC_1909

DC_1480
ATT
131–160

DC_1480 IPR003343 IPR008964 cd19958

G3DSA:2.60.40.1080
STR
301–384

G3DSA:2.60.40.1080 G3DSA:2.60.40.1080

IPR008964
RBD
303–382

IPR008964

IPR003343
STR
303–364

IPR003343

AFC22519.1

1 655

Architecture

ATT

STR

ATT 22-160 | STR 161-649 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1737	ATT	DC_1737	22	132	Novel HMM	DC_1737	N-terminal	Low	Positional only	26 proteins / 26 hits
DC_1480	ATT	DC_1480	131	160	Novel HMM	DC_1480	N-terminal	Low	Positional only	10 proteins / 10 hits
DC_1811	STR	DC_1811	160	400	Novel HMM	DC_1811	Central	Low	Positional only	19 proteins / 19 hits
IPR003343	STR	DC_0008	301	381	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	301	384	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	303	382	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	303	364	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	384	464	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	385	466	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
DC_1909	STR	DC_1909	447	649	Novel HMM	DC_1909	Central	Low	Positional only	63 proteins / 63 hits
cd19958	STR	DC_0464	521	603	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage ZF40 [NCBI]	1127516	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pectobacterium carotovorum [NCBI]	554	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

AFC22519.1 [NCBI]

Genbank nucleotide accession

JQ177065.1 [NCBI]

CDS location

range 45906 -> 47873
strand +

CDS

ATGGATCAGAAATTTTTTCGCGTGCCGTTTGCGCAGAGCGGCGATCGCCAAACTATTCCCGACGCAACACAGACCAGTGGTGCTGTGTCGTTTCCCAGCGGTTGGGGCGGTGATTACGCAAAAGACCCAGCTGTAGACGCGAATGCAAAACCCGTAGAGCGTGAGGCAATGAATGCGATTCTGTACGCCATCACTAACGCTGTACGGCAGTATCAAACGTTTGGTTTTCCCGAATACATCACGCCAGCAGACAACAACGGCGGGGCTTTCTCGTACAGTTCCGGCGCTGTTGTTCGCTACCGCGCAGCCGCAGACCAGCCGTTTAAGTCGTATGTATCGATCGCTGATAACAACACGTCAGTGCCAGGCTCTGACGAAACGAAATGGCAGGAGTTCATCTATCGTGAAGCGACGACGCAAGAAATTACAGAGGGTACTAGCGGAACTACAGTCGTATCACCGCGGCGACTCAAAGAGCGCACAGACATCATCGATGGCGAGATCGACGAGATTAACGACTCGCTGACGCGTGTCGGTAACCTTCAGGTCGCGCAAGTGAGTATCGATGCTCAAGGCTCGGTAGTGCTGAATGCCCCGACCGATTGCGTGCAGATTTTGATTATCGGCCACTACACGGCGGACGCCGTTGAAAGCCGAGATTACTGGGAGAGCAAACTCTCTGTGAATGGTGCGGTCGTCGATACAACCCCGTTTTACGGCTATGTTACGGGCTCACGTGGACACGGACACCATCGCCGCGAGTTGCTGCCATTTAGTCAGTTGGTTGATATGCAACTGACAGCCGGTGACGCGATCAATTTCGAATATTCGAGTAACAGGGGAAGCAGTACAACATTCACTGTTTTCTACATTCAAGGCGTCAGCACTGATAAACCCGATCATCCGACCGCTATTATCATTTCACCAGGAAGCAGCACTATAAACGCTGGTGGACAGCAGCAACTGACAGCAACGGTTTTACCGGCTAACGTGGCTGCTGATTACCCTGTTACGTGGTCAGTATCCGATCCAGCGTTAGGGAGCGTCGATAGTAACGGTCTGTACACAGCAAACAGCGGCGCCAGCGGCACGCAGAGTGTAATTGCCAGCGTATCGACTGGCTTAGCTTCCACTGCGACGATAACGCAGCATGTTTACCTGACGAATATTGATATCGGCAATCCGCCCGCGAATTTAATCGCCGACAGAACCTACACAGTCCCGATCACGTACAGTCCATCAAATTATACTGAACCGGTTCAGACATCATCATCAGACTCAACAATAGCGACGCTATCGATAGACGGCACGTTAACGATCAGCTCTGGAGGAACGGCAACGCTCACGCTCACAGGTGCCAGCTCCGGCGTCACTGACTCGATAACGATCACCGCGACTGAAGAGGTTGTGCCGGAGCGCTATTTGCAGATTGCTGAACGGCTGTCTGAGATTTCCACTGCTGGCTCAGCAGCACAGGCCGCAGCGCGGAGTAATTTGGGGCTGGGTGGACTGGCAACGAAAGACAGCCTCACAGCGGCTGACGTTGGCGCAGTTCCGCAAGCATCTGCATCACTCGGCACTGAGAACCTGAACACGGTCACGTCACCAGGCCGTAAATTCCAATCGTTGACGAGTAACGCCACGCTTGCGCGGAATTATCCCGTCGCACTTGCTGGCATGCTGGACGTTATCAGAACAACCGACGAAGGCATTCGCCAGACGTTCTACCCGTATAACACGACCGAGGTGTATCACCGCTACTGCGTTGACGTAGGCGCGAATCCTATCGTGTTCAGCACATGGGCAAAGTCTGGTGGAGACTATCTGGAGAAGTCACAGAACCTGCAGGACGTATCGGACAAACCGCTAGCACGCGATAACATGGGGGTGGGGTACACGATATCGACAAGTGAACCACCGGCCAGCGCCGCAGGCTACGCAGCAGGCCATATCTGGTATCAGGTTTAG

Genome Context

Tertiary structure

PDB ID

3102f36af8d3db73e0965d57c32cf7808fdaeec5a0f3e21cde9942f82b58f3e2

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7967

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence