Protein

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Genbank accession
XLM52567.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,63
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MADYSQLPIENIWSTGGDMVAPTPAQQQGGWGIQSVPRQWWNWKWNLHDTNLAYLLQKGIPEWTSTQEYIANKSFCTRGGFVYKAVRTHTGSDPAQVSANWVRAFADYTTASSALGGLTPREGGIPFFISATGASVFDSTAYGRGMLNVANASAARSYISAQESSVVLSNLSTVTRAANTVPYFNTDTSMATFNITAFGRGLVNAANAENARNFLELANSAIITADPANRAHTLVYRDAAGNFNAGVITATLSGNATTANKLRTPVTINGVAFDGSQNIVLPDLDTSYAGTVARLHINGANLSSADKTTQLALRNKSDNDWISLAVVDDNILRFVFRSATNPVVLIGNEVILHTGNQFSLGPTLTDARSRLGLDRLTQVRADTRVFSSTLDNGPYLTVQPAAIGGFNGRTNSWLFRFDDNGNMTHGTVPAARITGLPNWGEILNDIARAGAAWDAVGQYILAGDQSGWSGGPGTTRAGSQLKPYSTISYTAGALPAAGTYRCMGAFAGGGNHITLWQRIS
Physico‐chemical
properties
protein length:520 AA
molecular weight: 55411,03880 Da
isoelectric point:8,44209
aromaticity:0,09423
hydropathy:-0,14519

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM52567.1
1 520
Domain Start End Length (AA) Confidence
N-terminal 1 249 249 0,6319
Central domain 250 448 200 0,1707
C-terminal 449 520 71 0,9993
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-249
Central
250-448
C-terminal
449-520

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Ps_ZCPS13
[NCBI] 		3385019 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM52567.1 [NCBI]
Genbank nucleotide accession
PQ656807.1 [NCBI]
CDS location
range 20791 -> 22353
strand +
CDS
ATGGCTGATTACAGTCAACTACCTATTGAAAATATTTGGTCCACAGGCGGGGATATGGTAGCCCCGACCCCTGCGCAGCAGCAAGGCGGATGGGGTATTCAGTCGGTTCCTCGCCAATGGTGGAACTGGAAGTGGAACCTTCACGATACTAACCTAGCGTATTTGCTACAGAAGGGCATCCCAGAGTGGACTAGTACACAAGAGTACATTGCTAACAAATCGTTCTGCACTAGAGGTGGATTTGTTTACAAGGCTGTTCGTACACATACAGGAAGCGACCCTGCACAAGTTAGTGCCAACTGGGTTCGAGCTTTTGCAGATTACACCACAGCTAGTTCAGCACTAGGGGGCCTGACTCCAAGGGAAGGAGGTATTCCTTTCTTCATTAGCGCTACAGGAGCTAGCGTGTTTGACTCTACGGCCTATGGTCGCGGAATGTTGAATGTAGCTAATGCCTCCGCAGCTAGAAGCTACATTTCGGCTCAAGAAAGCTCTGTTGTACTGTCCAACCTGTCCACTGTGACTAGGGCTGCCAACACGGTTCCGTACTTCAACACGGATACCTCCATGGCTACCTTCAACATCACAGCGTTCGGAAGAGGACTTGTCAACGCGGCTAATGCTGAAAACGCAAGAAATTTCCTAGAACTAGCTAACTCTGCTATCATTACGGCAGACCCAGCTAACAGGGCACATACTCTGGTCTATAGAGATGCTGCTGGCAACTTCAACGCTGGCGTAATCACTGCTACCCTGTCTGGAAACGCAACTACAGCTAACAAGCTTAGAACCCCAGTTACAATCAACGGTGTGGCGTTTGACGGAAGCCAAAACATTGTTCTTCCGGACCTAGATACAAGTTATGCGGGAACGGTTGCACGTCTTCACATCAACGGAGCGAACCTTTCGAGTGCAGATAAGACTACTCAGCTAGCACTGAGGAACAAATCTGACAACGACTGGATTAGCCTTGCTGTAGTGGATGACAACATTCTCCGGTTTGTATTCAGAAGCGCTACAAACCCAGTTGTCCTGATTGGCAACGAAGTTATCCTTCACACAGGAAACCAGTTCTCTCTGGGCCCGACTCTTACAGACGCTAGGTCTCGTCTGGGTCTCGACAGACTCACTCAAGTTAGAGCTGATACTCGAGTCTTCTCCAGCACCTTGGACAATGGCCCCTACTTGACCGTACAACCTGCGGCTATCGGAGGATTCAACGGTAGAACTAACAGCTGGCTGTTCCGATTCGACGATAATGGTAACATGACTCATGGTACAGTTCCTGCCGCTAGAATCACTGGTCTGCCCAACTGGGGAGAGATTCTTAACGATATCGCTAGAGCAGGCGCAGCTTGGGACGCAGTTGGACAGTACATCCTAGCTGGCGATCAATCTGGATGGTCTGGTGGACCGGGGACAACTAGAGCTGGAAGCCAGTTGAAGCCTTATTCGACTATTAGCTACACAGCAGGGGCACTACCAGCAGCAGGCACTTACAGATGTATGGGAGCGTTTGCAGGTGGTGGTAACCATATTACCCTGTGGCAGAGAATTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5d27c0b176e99ef0c8de961605db99c23cd6a0ce6c73c241234e698b73653347
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6791
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50