Protein

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Genbank accession
YBB95547.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MAAGAQIGNLVYYYGGKNNANTALRTLNLATGELTTLQPTGTPIAVKQCSAVAFNGKVYFYGGESATDGVLTKGMQCYDPATNTWEIKSPGTIACRYARGTSLNGLIYILGAADTTATNNRGFTLMYNPTTDTYTSGAAFNDTGVYTQDYSVSVYNNSVCVIGGMVGAGINTGIISYNQTNNNWSKPITTGIPLGAAINIRPSGELYVIAGENQNNAPIKYYEPRLARWINLGNLETGLVDAGFANTFNNDGKIYVLNGNQNLKYQIS
Physico‐chemical
properties
protein length:268 AA
molecular weight: 28568,60790 Da
isoelectric point:7,54125
aromaticity:0,10448
hydropathy:-0,17724

Domains

Domains [InterPro]
IPR015915
STR
1–245
IPR015915
IPR015915
STR
5–186
IPR015915
PTHR45632
Unmapped
6–186
PTHR45632
IPR006652
STR
48–89
IPR006652
YBB95547.1
1 268
Architecture
STR
STR 1-245 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YBB95547.1
1 268
Domain Start End Length (AA) Confidence
N-terminal 1 53 53 0,1096
Central domain 54 257 205 0,6786
C-terminal 258 268 10 0,5733
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-53
Central
54-257
C-terminal
258-268

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeC_EG2
[NCBI] 		3455811 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YBB95547.1 [NCBI]
Genbank nucleotide accession
PV985319 [NCBI]
CDS location
range 88481 -> 89287
strand -
CDS
ATGGCAGCAGGTGCCCAAATAGGTAACTTAGTCTATTATTACGGTGGTAAGAATAATGCTAATACTGCTCTACGTACACTGAATTTAGCCACGGGTGAGTTAACAACATTACAACCAACTGGTACACCTATAGCAGTTAAACAATGCTCGGCTGTTGCATTTAATGGTAAAGTATATTTCTATGGTGGTGAAAGTGCCACAGATGGTGTACTCACTAAAGGTATGCAGTGTTATGATCCTGCAACTAATACATGGGAAATAAAATCACCAGGTACGATAGCTTGTCGGTATGCACGTGGAACTAGTCTTAATGGGTTAATCTACATATTAGGTGCAGCTGATACAACTGCAACAAATAATCGTGGATTTACATTAATGTACAATCCAACTACAGATACATATACCAGTGGTGCAGCATTTAATGATACTGGGGTATATACCCAAGATTATTCAGTGAGTGTTTATAATAATAGCGTATGCGTTATTGGTGGTATGGTTGGTGCTGGTATTAATACTGGAATCATATCGTACAATCAAACCAACAATAATTGGTCTAAACCAATAACTACAGGTATACCTCTTGGCGCAGCTATTAATATACGCCCATCTGGTGAACTTTATGTAATCGCTGGTGAAAATCAAAATAATGCACCAATTAAGTATTATGAACCACGATTAGCACGATGGATAAATTTAGGTAATTTAGAAACTGGTTTAGTGGATGCAGGTTTTGCTAATACGTTTAATAACGATGGTAAGATTTATGTTCTAAACGGTAATCAGAATTTAAAATACCAAATTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
12d14c307ced4243e875c58da6eb3d8447fcf57f0fa99e07707b945855a32d2b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7969
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Characterization of Lytic Bacteriophages Targeting Pseudomonas aeruginosa Ismail,G.H., Elariny,E.Y.T., Abdel-Haliem,M.E.F., Sobhy,N.M., Youssef,C.R.B. and Tartor,Y.H. — — GenBank