Protein

View in Explore
Genbank accession
AGH56125.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,60
Protein sequence
MSTLKVDTIRNQGGTGGKIQLLTSGDVNVNDNKLYVDSATSKVGINTSDPRAALEVEGNGGAIFKTSPLLEKTNNVSGTSNGNTTINVYNGAITLFDSDNTGNFTPNITYTDGGSVTTLNAYMENSENLVVTLISNNGGSSGYIPGNIQIDGSSVTTEWSGGSAPSARGGTGGYDVYAFSILKTGSSSYVVLASQTHFN
Physico‐chemical
properties
protein length:199 AA
molecular weight: 20528,10020 Da
isoelectric point:4,56402
aromaticity:0,07035
hydropathy:-0,27588

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56125.1
1 199
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7146
Central domain 11 188 179 0,0260
C-terminal 189 199 10 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-188
C-terminal
189-199

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn30
[NCBI] 		536474 Uroviricota > Caudoviricetes > Pantevenvirales > Leucotheavirus > Leucotheavirus syn30
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56125.1 [NCBI]
Genbank nucleotide accession
HQ634189.1 [NCBI]
CDS location
range 24414 -> 25013
strand -
CDS
ATGTCAACACTTAAAGTAGATACAATCAGAAATCAGGGGGGAACTGGCGGTAAGATCCAACTCCTGACTTCTGGTGATGTTAATGTCAATGACAATAAGTTGTATGTAGATAGTGCAACGTCGAAAGTTGGCATCAATACTAGTGATCCTCGTGCTGCATTAGAAGTTGAAGGAAATGGTGGTGCAATCTTTAAGACATCACCACTGCTAGAGAAGACAAATAACGTTTCTGGTACATCAAACGGAAACACAACCATTAATGTTTATAATGGTGCGATCACTCTGTTTGATTCTGATAACACTGGCAACTTTACTCCTAACATCACCTACACAGATGGTGGTAGCGTCACTACTTTGAACGCATACATGGAGAATAGTGAGAATTTAGTTGTCACTCTCATTTCTAACAATGGCGGTAGTTCTGGATATATTCCTGGAAATATTCAAATTGATGGCAGTAGTGTAACAACAGAATGGTCTGGTGGTTCTGCACCTTCTGCCCGTGGTGGTACTGGAGGATATGATGTTTATGCATTTTCTATCCTAAAAACAGGTTCATCTTCTTACGTTGTTTTAGCATCACAGACACATTTTAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
69ee4de309312f68db3b344f4c84cd6dcede6f1f368d1722545d354f9473203a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7317
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn30 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank