Protein

View in Explore
Genbank accession
YP_009217316.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSYTIHLKWVNPNGAGVTVNLYRSTSNIDRSNPGTPYVTFTNGETTYDDTNVTFGLKYYYMWESVKGTDVSKSKVFSFDALPFTGPGPQKLLFGNVNYGYYGSVNPLDFISNAALITACGQSWTADTDALQKWHKFSYKGKTIYVPDRRVSSTTTFTWLTIYNAGLMFGDKVPTVKPTPLGAAAEVPQNKRVTIRGYEFIVSCPTGIVAHDADPAGYVVDSTFGSWANVDSRLTNSAVDMFIMPLSNYFTNNRSLERIAPYIAQGNLTWPTGTNYVICREYNGTNVVFRDFTSTASAAGKPNARAASATVAGWYPILEMVPINVVNIGS
Physico‐chemical
properties
protein length:329 AA
molecular weight: 36139,24190 Da
isoelectric point:8,56993
aromaticity:0,13374
hydropathy:-0,16687

Domains

Domains [InterPro]
IPR013783
STR
2–78
IPR013783
DC_0638
ATT
15–328
DC_0638
YP_009217316.1
1 329
Architecture
STR
ATT
STR 2-14 | ATT 15-328 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009217316.1
1 329
Domain Start End Length (AA) Confidence
N-terminal 1 73 73 0,6826
Central domain 74 272 200 0,1530
C-terminal 273 329 56 0,9759
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-73
Central
74-272
C-terminal
273-329

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PhiPA3
[NCBI] 		998086 Uroviricota > Caudoviricetes > Chimalliviridae > Miltoncavirus PhiPA3 >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009217316.1 [NCBI]
Genbank nucleotide accession
NC_028999 [NCBI]
CDS location
range 224477 -> 225466
strand -
CDS
ATGTCGTACACAATCCATTTGAAATGGGTCAACCCGAACGGGGCTGGCGTCACGGTCAATCTGTACCGTAGTACGTCGAACATCGATCGTAGTAACCCCGGTACTCCATACGTTACCTTTACTAATGGTGAAACCACTTACGATGACACTAACGTCACGTTCGGTCTGAAATACTACTACATGTGGGAATCCGTAAAAGGTACCGACGTTAGTAAGAGTAAAGTCTTCTCGTTTGATGCGTTGCCGTTCACCGGTCCTGGTCCCCAGAAACTGCTCTTCGGTAACGTAAACTACGGTTACTATGGTAGCGTTAACCCACTTGATTTCATCAGTAACGCTGCTCTTATTACAGCGTGTGGCCAATCCTGGACAGCTGATACAGACGCTTTGCAAAAATGGCATAAGTTCTCCTATAAAGGGAAAACGATTTATGTCCCTGATCGCCGAGTATCTAGTACAACAACCTTTACCTGGTTGACTATTTACAACGCCGGGCTGATGTTTGGCGATAAAGTACCCACTGTGAAGCCGACTCCACTGGGTGCAGCCGCAGAAGTACCCCAGAACAAACGTGTCACCATCCGTGGTTATGAGTTTATCGTTTCCTGTCCTACTGGCATTGTTGCACACGATGCTGACCCAGCTGGATATGTGGTTGACTCCACGTTCGGGTCTTGGGCAAACGTTGACTCTCGTCTGACTAACTCAGCAGTTGATATGTTCATAATGCCGCTGAGTAACTACTTCACAAACAACCGTTCTCTAGAACGAATTGCGCCGTACATTGCACAAGGTAACTTAACATGGCCGACCGGCACAAACTATGTAATCTGTCGTGAGTACAATGGCACCAACGTTGTTTTCCGTGACTTCACGTCAACTGCTAGTGCCGCAGGTAAACCAAACGCCCGCGCCGCGAGCGCCACTGTGGCCGGTTGGTACCCAATTCTTGAAATGGTGCCGATTAACGTAGTTAACATTGGGAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
713b207c1af1d9b6ca219e408bf30dbf65633b82b74f0157ee252ce95bedfd7d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7462
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50