Protein

View in Explore
Genbank accession
WQZ00197.1 [GenBank]
Protein name
constituent protein
RBP type
TSP
Evidence DepoScope
Probability 0,67
Protein sequence
MAYQVYKVEKPKGVNFSLEPSQLDSTMWDEANEVSFKHGKTKKVSGYEQGLGQTGVLNDGSVYPEIILPLRDDTDENYWWAYASTKQDGAGEIYRIVTKDLHQDVTPTAGIPDEPEFRWFGDTINGVPYFMKGKPYVWDGVSKFEELETFPGHVKAQVMRTYGNHMVAMDFKVDNFTPPADPQTPEEEYQAKFSPWNEGRHRSAVWWSSAINTKDLSVSWADADPTTESGWNFLGGNGGPILGGKSLRESFIIYRERAVWQMSYIGGILVFAFKELFNDVGVLGPDCVAEIDGYHFVVGQSDIYMHNGVHKESVADGIVRQRIFDSIDPDHIDKVFVAVRYQEKEAWVCIPEASTNTNGRCNVAYVYNWEERHWSKRDMPDSLTSTYTILSITEGDITWTAPSESATWEEATDTWISSYFKYNSSQWGLAFAGVTSDGKGAVYTTIDEPTWDGANFKASVEKKWIDMEDYTTTKTLNKIWPLVRGGEIDVWVAGSETTTQSPNWRYVGRFDPNKRANLGCTATGKFIHVKFEIPEKSRAELRGYWLEYKATGAR
Physico‐chemical
properties
protein length:554 AA
molecular weight: 62779,17090 Da
isoelectric point:4,99356
aromaticity:0,13357
hydropathy:-0,53556

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WQZ00197.1
1 554
Domain Start End Length (AA) Confidence
N-terminal 1 60 60 0,9890
Central domain 61 259 200 0,2781
C-terminal 260 554 294 0,5788
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-60
Central
61-259
C-terminal
260-554

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValC_WD615
[NCBI] 		3110544 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WQZ00197.1 [NCBI]
Genbank nucleotide accession
OR908438 [NCBI]
CDS location
range 35558 -> 37222
strand -
CDS
ATGGCATACCAAGTTTATAAAGTTGAGAAACCAAAAGGTGTCAACTTTTCACTAGAGCCATCACAGTTAGATTCTACTATGTGGGACGAGGCTAATGAAGTATCGTTTAAGCATGGTAAGACTAAGAAGGTATCTGGTTATGAACAAGGCTTAGGTCAGACTGGTGTTCTTAATGATGGTTCGGTATATCCTGAAATTATCCTCCCTTTGCGAGATGATACTGATGAGAACTACTGGTGGGCTTATGCCTCAACCAAACAAGATGGTGCTGGTGAAATCTACCGTATCGTCACTAAAGACTTACACCAAGATGTTACACCAACAGCAGGTATTCCAGATGAACCTGAGTTCCGTTGGTTTGGTGATACAATTAATGGTGTTCCATACTTCATGAAAGGTAAGCCTTACGTGTGGGATGGAGTAAGTAAATTTGAAGAACTGGAAACATTCCCCGGACATGTTAAGGCTCAGGTTATGCGAACCTACGGCAATCACATGGTGGCAATGGACTTTAAGGTAGATAACTTCACACCTCCGGCTGACCCACAAACGCCAGAAGAAGAATACCAAGCTAAGTTTAGTCCTTGGAACGAGGGACGTCACCGCTCTGCTGTATGGTGGTCTAGTGCTATCAACACAAAAGACTTAAGTGTTTCTTGGGCAGATGCAGACCCAACTACAGAGTCCGGTTGGAACTTTCTAGGCGGTAATGGTGGACCGATTCTTGGGGGTAAATCACTTCGAGAGTCGTTCATCATTTACCGTGAACGAGCAGTATGGCAGATGTCATACATTGGCGGTATCTTAGTATTCGCCTTTAAGGAATTGTTTAACGACGTAGGTGTACTCGGTCCAGACTGTGTGGCTGAGATTGATGGCTACCATTTTGTGGTAGGTCAATCAGACATCTATATGCACAATGGTGTACACAAAGAATCAGTAGCTGATGGTATTGTCCGTCAACGTATCTTTGATTCTATTGACCCAGACCATATTGACAAGGTATTCGTAGCAGTACGTTACCAAGAGAAAGAGGCATGGGTATGTATTCCAGAAGCATCAACAAATACAAATGGTCGTTGTAACGTAGCATACGTATATAACTGGGAAGAACGTCACTGGTCTAAACGAGATATGCCAGATTCATTGACTTCTACTTACACTATCCTATCTATTACAGAGGGTGATATTACATGGACAGCGCCATCAGAAAGCGCTACATGGGAAGAAGCCACTGATACATGGATTAGTTCATACTTTAAGTATAACAGCTCACAGTGGGGCTTAGCGTTCGCTGGTGTTACCTCAGATGGTAAGGGTGCTGTATATACAACTATTGATGAGCCAACTTGGGATGGTGCTAACTTTAAAGCTAGTGTAGAGAAGAAATGGATTGACATGGAAGACTATACAACCACTAAGACACTCAATAAGATTTGGCCTCTCGTTCGGGGTGGTGAGATTGATGTGTGGGTAGCTGGTAGTGAGACAACTACACAGTCTCCTAACTGGAGGTATGTTGGTAGGTTTGACCCTAACAAGCGAGCTAACCTAGGTTGTACAGCAACAGGTAAGTTCATTCATGTTAAGTTCGAAATCCCAGAGAAGAGTCGTGCAGAATTGCGTGGCTATTGGCTAGAATATAAAGCAACAGGAGCTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
560ad7a00a86ee866c17474f90ccd219e6b5532611ed1cfee0697e05352a6c45
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8400
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a novel bacteriophage against Vibrio alginolyticus from coastal waters and its environmental tolerance Dai,L., Wu,J. and Wei,W. — — GenBank