Protein

View in Explore
Genbank accession
YP_004324285.1 [GenBank]
Protein name
baseplate wedge tail fiber protein connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MARQGIFTGFTPNDGLGDSLALGATKVNQNFTEIYTTFGDGTNLSANAGSAGTWTKAGNSGIYTSKNVGIGTTDPTAALFVSGNVQLTGITTGTFVGDGSGLTGVTATGSGVVIKDSGVLVGVAQSLNFDRNLDVTQAFGGNVTIGAADTVGFAYTSGFSTTSAYANVAGVSTTSGTAGFADTATLAYTANFATVAGIVTYAQASGIATNSGVAEYAKVAGVATYTGNTGFATMAGYAHTAGIASVAQNLTGTPSIVVDNVNGLGIVTFPGQGSKMRFDFDATGDLPSATSWRGMFAWANNTKTAYVSSGTTMGGYNGWRKILHGDHLGNYFTVGVITASKFAGDGSELTNLPSTDSIWRTNSTGIHTLSNVGLGTTNTQSYKLRVVGNLGIAGRVDGTATDNRLPFLWASYSSLPLPGDYHGQFAHAHDTGKAYFAHAGAWIELISRNLDNTVGTGTEHYKVGVITATSFTGDGSGLSNIAVSYAASSGIATLSRGLTGKPDILVANINCTGIVTGATFVGDGSGLTGITASGSGIIIREGGTLVGTIGTVNFGTGFSVSPASAGVVTVTTSGGGGGGISGMVYQEEGSTVGTAQTVNFIGAACTVTHSGGVATVNLAGAVPFTGAAATITGLDISQYEQAYSWGNHASAGYITNINGSNLGDLSNVSSATPSTNHVLTWSGSQWVPAAAQGGGGSGGGVIIKEEGTNVATGVTSINFVGSGVTATASGTDATITISAIGGGGGVSTTGFGTYTASAGVEQQIDSFPVASYSGAEYTFMIGLGTFRQSQKVLVMHDGSTAFSQEYGIMFSPEQQVSIAATISSGNVLVKFTPEAGISGLSTYRYVKTLIQGL
Physico‐chemical
properties
protein length:853 AA
molecular weight: 85414,24950 Da
isoelectric point:5,24427
aromaticity:0,08675
hydropathy:0,15147

Domains

Domains [InterPro]
DC_0533
ATT
1–57
DC_0533 DC_1345 DC_1556
IPR036240
STR
2–69
IPR036240 DC_1345
YP_004324285.1
1 853
Architecture
ATT
STR
STR
RBD
ATT 1-57 | STR 58-69 | STR 85-510 | RBD 544-853
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004324285.1
1 853
Domain Start End Length (AA) Confidence
N-terminal 1 83 83 0,7768
Central domain 84 286 204 0,2307
C-terminal 287 853 566 0,4969
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-83
Central
84-286
C-terminal
287-853

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SSM7
[NCBI] 		445686 Uroviricota > Caudoviricetes > Pantevenvirales > Lipsvirus > Lipsvirus ssm7
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324285.1 [NCBI]
Genbank nucleotide accession
NC_015287 [NCBI]
CDS location
range 186336 -> 188897
strand -
CDS
ATGGCTCGACAGGGAATATTTACTGGATTCACACCGAATGATGGTCTGGGAGATTCCCTCGCCTTGGGTGCAACCAAAGTAAACCAAAACTTTACAGAGATCTATACTACCTTTGGTGACGGAACAAACCTTAGTGCCAATGCAGGGAGTGCTGGTACTTGGACAAAGGCAGGGAACTCAGGAATCTACACAAGTAAGAACGTTGGCATCGGAACAACCGATCCTACTGCTGCTTTATTTGTATCAGGTAACGTTCAATTAACAGGTATTACAACTGGAACATTCGTTGGAGATGGTTCTGGTCTGACTGGTGTGACTGCAACAGGTTCTGGTGTTGTCATTAAGGACAGTGGTGTTCTAGTTGGTGTTGCACAGAGTCTTAACTTCGATAGAAACTTAGATGTTACACAGGCATTTGGTGGTAACGTTACAATCGGTGCTGCTGATACAGTAGGATTTGCATATACTTCTGGATTCTCTACCACATCTGCATATGCAAACGTTGCTGGAGTATCTACCACATCAGGAACAGCTGGGTTCGCTGACACGGCAACTCTGGCTTACACTGCAAACTTTGCCACAGTCGCTGGTATTGTAACCTACGCACAGGCATCTGGTATTGCAACTAACTCAGGAGTAGCCGAGTACGCAAAGGTAGCTGGTGTTGCAACATACACTGGTAACACTGGGTTTGCAACCATGGCTGGGTATGCACACACAGCTGGTATCGCCTCAGTCGCACAGAATTTAACAGGAACTCCATCAATAGTTGTTGATAATGTCAATGGTCTTGGAATTGTAACCTTCCCAGGCCAAGGTAGTAAGATGCGTTTTGACTTTGACGCAACAGGTGACTTACCTAGTGCTACAAGTTGGAGAGGTATGTTTGCATGGGCAAACAATACTAAGACTGCATATGTTTCCAGTGGAACCACAATGGGTGGTTACAATGGTTGGAGAAAGATACTTCATGGTGATCATCTAGGTAACTACTTCACCGTGGGTGTTATAACTGCATCCAAGTTTGCTGGTGATGGATCTGAACTTACAAACTTACCATCAACAGATAGTATTTGGAGAACAAACTCCACTGGTATTCACACTCTCAGCAATGTTGGTCTTGGAACTACCAATACACAGAGTTATAAACTTAGAGTTGTAGGTAATCTTGGAATTGCTGGTCGTGTAGACGGTACTGCAACAGATAATAGACTACCATTCCTATGGGCTTCTTATTCATCTCTACCTTTGCCAGGAGATTATCACGGTCAGTTTGCACATGCACATGATACTGGTAAAGCATACTTTGCACACGCTGGTGCATGGATAGAACTCATCAGTAGAAACCTTGATAATACTGTAGGAACAGGAACTGAACACTATAAAGTTGGTGTTATAACTGCGACATCATTCACTGGTGATGGATCTGGATTATCTAATATCGCGGTATCCTATGCAGCTTCTTCTGGTATCGCAACTCTATCAAGAGGATTGACTGGTAAACCAGACATTTTAGTTGCTAATATCAACTGTACTGGTATTGTTACTGGTGCAACATTCGTTGGAGATGGTTCTGGACTGACAGGTATCACCGCATCTGGTAGTGGTATTATCATTAGAGAAGGTGGCACACTCGTAGGAACTATTGGAACTGTAAACTTCGGAACTGGTTTCAGTGTTTCCCCTGCATCTGCTGGTGTTGTAACAGTCACCACATCAGGTGGTGGAGGTGGTGGCATCTCTGGTATGGTATACCAAGAGGAAGGATCTACCGTTGGTACTGCACAGACAGTTAACTTTATTGGTGCTGCATGTACAGTGACGCATAGTGGTGGAGTTGCAACTGTTAACTTGGCAGGAGCGGTTCCATTCACAGGTGCTGCTGCAACTATCACTGGTCTAGATATATCCCAGTATGAACAAGCATACTCATGGGGCAACCATGCAAGTGCTGGATACATCACAAATATTAATGGTTCAAACTTAGGTGATCTATCTAATGTTTCGAGTGCAACTCCAAGCACCAACCATGTACTAACATGGAGTGGATCACAATGGGTTCCAGCTGCTGCTCAAGGTGGTGGTGGTAGTGGTGGTGGTGTCATCATCAAAGAAGAGGGAACTAACGTTGCAACAGGTGTAACCTCAATCAACTTTGTTGGAAGTGGAGTCACTGCAACGGCATCTGGAACTGATGCAACTATCACGATCAGTGCAATAGGTGGTGGCGGTGGTGTCTCAACCACTGGATTCGGAACATACACTGCATCCGCTGGTGTAGAACAACAGATTGATTCATTCCCAGTTGCCAGTTACTCTGGTGCTGAGTACACATTCATGATTGGTCTGGGAACATTCAGACAATCACAGAAAGTTCTTGTCATGCACGACGGAAGCACAGCGTTCTCACAAGAATATGGCATCATGTTCTCTCCAGAACAACAGGTATCTATTGCTGCAACAATAAGTAGTGGTAACGTTTTAGTTAAATTCACACCAGAGGCAGGGATCTCTGGATTGTCCACATATAGATACGTTAAGACTCTGATTCAAGGATTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f006d8ec4ee7c14b2a008e7fe5ca783743a6e39f451181835a730d865b840cdd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5929
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8109-3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank