Protein

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Genbank accession
XYM58792.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADRFPLAVNFSSRKIEEFISGDNLDMTGNGIVISGNPGISGQYLRSTGSVIEWGNPGDVYIDAVQTLTNKTLTSCNISGSTNIITNIPNSSLVNAYIIVNGEQVALGQTIGTADTNTTYTISAEDGSIASQKIIRLTSGGSTAGVEDDVTLVAGANVTLTREEDAITITSSYVDTNTVTSLQSAVGGSLVSGDITIAAGGSSTVSQTGNTITISSSYVDTITTLRAGTGQTSQSGDFTLLQDGATTLSQSGRDITISSQDTITRVKGGSSGTFQSGDILIDASGAASVSQSGNTVTIGATDTNTITRVRGGTSGSFGSGDVTILASGSATVSQNGLDIEINAVNTNTLYDANSNGGLTVSSEQFSLKNATNLTDNGILKWDGGNNQLASSIISDDGSTVTVTGDFVVTGTNTVINTTTLQVTDNIIELRKGNSLTGLNAGIQVNRTTNSAGSVLTFAQLQWYEAGAYWQVYDGSVSKRLVTESETQTLTNKTLTNPTLTDPNIGAALATSINGLGITSTTSGTLTIADTKGLTINNSVTIQGDDNSTVNYRAGGNVAYTGDSLSVFATTTSTQFRGVVSDATGVGFVAFNENPTFVNSLLTSSTKFDLFNTVATELNIGGDGTNINIGADSGTTTINHSIDVAGNAEFNEIVGDTFTVYGTPNFENSDISIRGSGANPIKIGRGGNNVASNTRIGYGALEANTSGTKNVAFGFESLLVGNTTNDCVAVGYRTQRANLEGDDNVAIGSDCQLTVQNGRGNVAIGSSALESNISGNYNVCVGHFAGYSLLGSGNVLIGPSGDENSTNATFAPINLSGDNQLIIASGTEAWIRGDSSFNVICPNNLQVGGNTVITGDLIVNGTTTTVNSNVVTVDDKAIELAAVVNTTFEATVVDGSPNISAINPTSGLIPGMEVNIVTNGLSVPVGTYILSITGNTAVLSAAVSGSGGLATMEAYGPSELGADGGGIIVRGSADGTLDKTILYDHSRTDKYWTFSESIEIAFGKKFTIGNLLVLDTTTLGSSVVNSSLTSVGTLTSLTVNGAVDFGGRVVESNLGSFTSGLTPSANVLTINVAASNTVLGQPASSAINTWAFTGVNLNNNESITVTLILDSNTAASYGDACTVDGTSVSNGVRWSGGSPPIATTNTDILTFVIIRDGSGVTRVFGQGNTDFS
Physico‐chemical
properties
protein length:1171 AA
molecular weight: 119546,55400 Da
isoelectric point:4,16842
aromaticity:0,05465
hydropathy:0,01699

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM58792.1
1 1171
Domain Start End Length (AA) Confidence
N-terminal 1 645 645 0,5640
Central domain 646 985 341 0,7548
C-terminal 986 1171 185 0,8995
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-645
Central
646-985
C-terminal
986-1171

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-FR1
[NCBI] 		3413218 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM58792.1 [NCBI]
Genbank nucleotide accession
PV340855 [NCBI]
CDS location
range 180958 -> 184473
strand -
CDS
ATGGCAGATCGTTTTCCTTTAGCAGTAAACTTTAGCTCCAGAAAAATTGAGGAGTTTATATCTGGAGACAATCTAGATATGACTGGAAATGGTATTGTCATCTCGGGAAACCCAGGGATCTCAGGACAGTACCTACGAAGTACAGGTAGTGTCATTGAGTGGGGTAACCCTGGTGACGTTTACATTGATGCTGTTCAAACCCTAACGAACAAAACTCTTACCAGTTGTAACATCTCTGGTAGTACAAACATCATTACCAATATCCCAAACAGCTCTCTTGTTAACGCATACATCATTGTTAACGGAGAACAGGTTGCTCTTGGTCAGACAATTGGAACTGCAGATACTAATACTACATACACCATCAGTGCCGAAGATGGTAGTATTGCATCTCAAAAAATCATTCGCCTTACTTCTGGTGGTAGTACGGCAGGTGTTGAAGATGATGTTACTCTCGTAGCTGGTGCTAACGTAACTCTAACAAGAGAAGAAGATGCTATCACAATTACATCAAGTTACGTTGATACAAATACAGTAACAAGTTTACAGTCTGCTGTTGGTGGTAGTCTGGTTTCTGGTGACATCACAATTGCAGCGGGAGGTTCTTCTACCGTATCTCAAACTGGAAATACGATTACAATTTCTTCCAGTTATGTAGATACAATCACAACTCTACGTGCAGGCACAGGTCAAACTTCACAGTCTGGTGACTTTACTTTACTCCAAGACGGAGCAACTACCCTCAGTCAAAGTGGTAGAGATATCACTATCAGTTCTCAAGATACTATCACCAGAGTCAAGGGTGGTAGTTCTGGTACATTTCAATCTGGTGATATCTTAATCGATGCTTCTGGAGCAGCTTCTGTAAGTCAGTCTGGAAATACAGTTACAATTGGTGCAACAGATACTAATACTATTACTAGAGTGAGAGGTGGAACCAGCGGATCTTTTGGTTCAGGTGACGTTACTATCCTGGCATCTGGTTCAGCAACAGTATCACAGAATGGTCTGGACATTGAGATCAATGCTGTAAACACCAACACTCTGTATGATGCAAATTCAAACGGTGGTCTTACAGTATCAAGCGAACAGTTCTCACTTAAGAATGCTACCAACCTAACTGATAACGGAATCCTTAAGTGGGATGGTGGTAACAACCAGTTAGCATCTAGTATTATTAGTGACGACGGATCTACAGTCACAGTTACTGGTGACTTCGTTGTTACTGGAACAAACACAGTCATCAATACAACAACTCTACAAGTTACTGACAACATCATTGAGTTGAGAAAAGGTAACAGTCTGACTGGTTTGAATGCAGGTATTCAAGTCAACAGAACAACCAACTCCGCAGGATCAGTTCTAACCTTCGCTCAGTTACAATGGTATGAAGCAGGTGCTTACTGGCAAGTCTATGATGGTTCGGTTTCTAAGAGACTTGTAACTGAATCTGAAACTCAAACACTCACCAATAAAACTCTCACCAATCCAACACTCACAGATCCAAATATTGGTGCAGCACTAGCAACATCAATCAACGGTCTTGGTATTACAAGCACAACCTCTGGTACTCTCACCATCGCAGACACCAAGGGTTTAACTATCAATAACTCTGTCACCATTCAAGGTGATGATAACTCCACTGTTAACTATAGAGCTGGTGGTAACGTAGCATACACAGGTGACTCACTATCAGTTTTTGCAACCACAACTTCAACGCAGTTTAGAGGTGTTGTTAGTGACGCTACTGGTGTTGGTTTTGTTGCTTTCAACGAGAACCCAACGTTTGTTAACAGTCTCCTAACAAGTAGCACCAAGTTCGATCTGTTCAATACAGTTGCAACAGAATTAAATATCGGTGGTGACGGTACAAACATCAACATTGGTGCAGACAGTGGCACAACCACAATCAATCATTCTATTGATGTTGCAGGTAATGCTGAGTTCAACGAGATTGTTGGCGACACCTTCACTGTATATGGTACACCAAACTTTGAGAATTCCGACATCAGTATTAGAGGTAGTGGTGCTAACCCAATCAAGATTGGTAGAGGTGGTAACAATGTAGCATCTAATACTCGTATCGGATATGGAGCACTAGAGGCAAACACCAGCGGCACCAAGAACGTAGCATTTGGTTTTGAATCTCTACTTGTAGGTAACACCACAAATGATTGTGTTGCTGTTGGTTATAGAACACAACGTGCAAACCTAGAGGGTGACGACAACGTAGCGATTGGTTCTGATTGTCAATTGACTGTACAAAATGGTCGTGGCAACGTGGCGATTGGTTCTAGTGCATTGGAATCAAACATCTCTGGTAACTACAACGTCTGTGTTGGTCACTTTGCTGGTTACTCTCTCCTGGGTAGTGGTAACGTTCTGATTGGTCCTTCTGGCGACGAGAACTCAACCAACGCAACCTTCGCACCAATCAATCTCAGTGGTGACAACCAACTAATCATTGCATCTGGTACTGAAGCATGGATCCGTGGCGACTCTTCCTTCAATGTTATCTGCCCCAACAATCTACAGGTTGGTGGCAACACCGTCATCACAGGTGACCTCATAGTTAATGGTACGACCACGACCGTGAACTCGAACGTCGTGACAGTTGACGATAAAGCAATCGAACTTGCTGCTGTTGTTAACACCACATTTGAAGCCACTGTCGTTGATGGATCTCCAAACATCAGTGCGATTAATCCAACAAGTGGACTAATCCCTGGTATGGAAGTCAACATCGTAACTAATGGTCTAAGCGTACCAGTTGGAACCTATATCCTATCCATCACAGGTAACACTGCGGTCCTGTCTGCTGCTGTTAGTGGATCGGGTGGTTTGGCAACGATGGAAGCATACGGTCCTTCTGAACTGGGTGCAGATGGCGGCGGCATCATTGTTCGTGGTTCTGCTGATGGAACTCTAGACAAGACTATCCTATACGATCACAGCAGAACTGACAAGTATTGGACATTCTCCGAAAGTATTGAAATTGCATTCGGCAAGAAGTTTACTATCGGCAACCTGTTGGTACTAGACACTACCACACTTGGTTCCAGTGTTGTCAACTCCTCCCTCACCAGTGTAGGAACACTAACCTCCCTAACTGTTAACGGTGCTGTTGACTTTGGTGGTCGTGTTGTTGAATCAAACCTTGGTTCTTTCACCAGTGGTCTCACACCTTCTGCTAACGTACTAACGATTAACGTTGCAGCATCCAACACTGTCCTGGGTCAACCAGCATCGTCTGCAATCAACACCTGGGCGTTCACTGGTGTCAATCTAAATAATAATGAATCTATTACAGTTACTTTGATTCTTGATTCTAACACTGCAGCATCTTATGGTGACGCATGTACAGTGGATGGAACCAGCGTTTCTAATGGTGTTAGATGGTCTGGCGGTTCTCCACCGATTGCAACAACCAACACAGACATTCTAACGTTCGTGATTATTAGAGATGGTTCTGGTGTAACTAGAGTATTTGGTCAAGGTAACACCGACTTCAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
69fb67c795227d26444d469b9a5bdf793181aa7c21ff7d4c68c9f14231bf5ff4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7395
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50