Protein

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Genbank accession
NP_542576.1 [GenBank]
Protein name
minor virion protein VP1
RBP type
TSP
Evidence RBPdetect
Probability 0,60
Protein sequence
MAYTSKLKEWGAVAEERSEFPDGYRYTKENPPVTHYDNFLVHNLIEDVQHLVDLTNAIDPDNDGQVADAETVQGNTPEQLGGFQYVQGANPDVGNKGTTWLKNTSNLLFVSDGERYDIEPETGYDETHDFSGSEGFSLTHETPARTRLDAGSLKLINEQVVADFNSGISPDHGAWSWSSTSGISHDSANGRAEITSSGDATTPQLQRDVPVAQDIEFAFSVSEDTANINDESIIRLDDENGNRELEIQFNDGAGNVSLSDGTELLSSWTAGQTYVFEVDPDFGAGTVDVVIDGQTIISGRPMDATGISNIWFGSKTTDSGSVRSVFVDNVHTGAREYGEVVVSCPEPDSRIEGWDLLRFDRTMAGESVVVDVEDETGTTLVSDIQSNEDLSLAIDAATNPQVRVTFSREDTTNNPSFDYLYRRWSLRPGDNGVNIRAFGSGGEDNVHEINFTAPVTKNEDGRVTVDLDPRYVNETGDSMSGDLDVNASVQVGDDLVLDDDDGQQFIVVGKDSDTLTIAESGGSEFEQMDVNARKFTKQGHEVWHEGNRAYQVRKNNFISVKLSRR
Physico‐chemical
properties
protein length:565 AA
molecular weight: 61880,01960 Da
isoelectric point:4,23100
aromaticity:0,07965
hydropathy:-0,58903

Domains

Domains [InterPro]
DC_0289
ATT
1–190
DC_0289 IPR013320 DC_0290
NP_542576.1
1 565
Architecture
ATT
STR
RBD
ATT 1-190 | STR 211-385 | RBD 386-565
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_542576.1
1 565
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9911
Central domain 132 361 231 0,1669
C-terminal 362 565 203 0,2647
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-361
C-terminal
362-565

Taxonomy

  Name Taxonomy ID Lineage
Phage Halorubrum phage HF2
[NCBI] 		33771 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Halorubrum coriense
[NCBI] 		64713 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_542576.1 [NCBI]
Genbank nucleotide accession
NC_003345 [NCBI]
CDS location
range 50977 -> 52674
strand -
CDS
ATGGCGTACACTTCTAAACTCAAGGAATGGGGAGCCGTCGCTGAGGAGCGTTCGGAGTTCCCCGATGGGTACAGGTACACGAAGGAAAACCCGCCCGTCACGCACTACGACAACTTCCTCGTACACAATCTCATCGAGGATGTTCAGCACCTCGTTGACCTCACGAACGCAATCGACCCCGACAACGACGGGCAGGTTGCTGACGCCGAGACGGTTCAGGGGAACACCCCGGAACAGCTTGGTGGATTCCAGTACGTTCAGGGAGCTAATCCCGACGTTGGAAACAAGGGGACGACGTGGCTGAAGAACACCTCGAATCTTCTGTTCGTCTCTGACGGAGAGCGGTACGATATTGAGCCTGAGACGGGCTACGACGAGACGCACGACTTCAGCGGCTCCGAAGGCTTTTCGCTGACCCACGAGACTCCGGCGAGAACCCGACTCGATGCGGGGAGTCTCAAGCTCATCAACGAGCAGGTCGTCGCTGACTTCAACTCTGGTATCTCTCCAGACCACGGAGCGTGGTCGTGGAGTAGCACTTCGGGCATTAGCCACGACTCGGCAAACGGTAGAGCCGAGATTACTTCGAGTGGGGACGCAACGACGCCTCAGCTCCAGCGGGACGTTCCGGTGGCTCAGGATATTGAGTTCGCCTTCTCGGTGTCGGAAGACACGGCGAACATCAACGACGAGTCTATCATCCGGCTTGACGACGAGAACGGAAATCGTGAGCTGGAGATTCAGTTTAACGATGGTGCTGGAAACGTCTCTCTTAGTGACGGCACGGAACTTCTCTCGTCGTGGACTGCCGGACAGACCTACGTGTTCGAGGTTGACCCCGACTTCGGGGCTGGAACCGTTGATGTGGTAATCGACGGTCAGACTATTATCAGCGGTCGCCCGATGGATGCGACTGGTATCTCGAACATCTGGTTTGGCTCGAAGACCACGGACTCCGGTTCTGTCCGTAGTGTATTCGTGGATAATGTCCACACCGGAGCGAGAGAGTACGGCGAGGTCGTCGTGTCTTGCCCGGAACCGGATTCACGCATCGAGGGGTGGGATTTGCTCCGCTTCGACCGAACGATGGCCGGAGAAAGCGTCGTCGTTGACGTGGAAGACGAGACGGGCACTACGCTTGTCTCTGATATTCAGTCGAACGAAGACCTCTCTTTGGCTATCGACGCGGCGACGAACCCACAGGTTCGCGTTACGTTCTCTCGGGAAGATACGACGAACAACCCGTCGTTCGATTACCTCTACCGGCGCTGGAGCCTCCGGCCCGGAGACAACGGTGTGAACATCCGAGCCTTCGGCTCTGGTGGCGAGGACAACGTTCACGAAATCAACTTCACGGCCCCCGTTACGAAAAACGAAGATGGTCGTGTGACAGTTGACCTCGACCCGAGATACGTTAACGAGACAGGCGACTCGATGAGTGGCGACCTCGATGTGAACGCGAGCGTCCAAGTCGGTGACGACCTCGTTCTTGACGACGATGATGGACAGCAGTTTATCGTGGTCGGAAAGGACTCGGATACCCTCACGATTGCGGAATCTGGAGGTTCTGAGTTTGAGCAGATGGACGTGAACGCGCGGAAGTTCACGAAGCAGGGACACGAAGTTTGGCACGAAGGGAATCGAGCCTATCAGGTTCGCAAAAACAACTTCATTAGTGTAAAACTTTCACGGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7d4621c8d624354e0718f8e9393db9b103654d106d066cf3405a35f0aea45da4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6734
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50