Protein

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Genbank accession
XPK41836.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,74
Protein sequence
MALYPIKSLGAIGVIADQAPTDLAPNAFTNAMNARFVEQRVFKTGGNAPLSYVEEDKDLTPLSFVSMPFDYYSAGNSFLVVGTDKKLYKLTDESLTDISRKVATVTKKASAIIKIYPVVSRIVPKESTITMNFNQTKELEVQVFPEDANNANLTWEVSNPSYASIAVNPTDSKKATLTTLSTEGTLSITVSTEDESVTAQISVNIVDGDTGIFLSQDTITIRRGGTTTLTAISGKTPITWVSSNGGALSVTPNANTLTAVLNAIGEGTFTVTADNGSKSATCTVNVIPQIDSISLSQTDVQMDRGTQYVLTATVNPADAPNKAITWTSSNPNIATVSGTSTEATITGLLAGFTEITAVTEEGSRSAVCTVRVNLAGRMLNTRSLAMAASASLVEEFKEEEEPVVQNEEIVYFMSDSMGIDTSGMAEGNNFFDYSNVFDMEGFARAAENSRAAPLTNVTLDIVEASLDVGEEIVITATAAPEGDYSYQWVVDKSGYVSTTSTTGRSLKLTAVRKGEIKVTCTASQMTQRDYDAFDDYPWYHAVISNCAVATTHYETPQVKEFESEYFTDLPGWGEQTVVDGDGNPSVRKFNWKCERVRAFNNRLFALNMRESNASGVTTHYPLRLRWSNFANENKAPTLWDDYAYDRLTTSDLSANIVGQTEALENGYAGYIDLADSNGSLIDVLPLKDYLFVYTEFETYIGSPTNNTYQPLMFKKLFNDSGILAPECVVEVEGGHFVVTQNDVILHNGASKKSIASNRVKNMLINEVCLVNPLATRVHLHQDKKEVWVMYVGPGEPKESFACTKAAVWNYEFDTWSFRTIPYAQCIGLVDPPVLERGPVWTDFQTITWDDPAIDKLVWRKDATNFRQRITIVGSFLRGFYQVDVGALDYFYDRANDRVIERPLEMRLERTGIDFDNVTNEWNQKHINRFRPQTTGSGTYIFEAGGSQFSNEYGHNHTTKSYTIGVDRHVAVRLNHPYLFYNVIDNDVNSNAAINGLTIEFNVGGRR
Physico‐chemical
properties
protein length:1006 AA
molecular weight: 110865,54960 Da
isoelectric point:4,80701
aromaticity:0,09642
hydropathy:-0,24771

Domains

Domains [InterPro]
DC_0191
STR
14–1006
DC_0191
IPR003343
STR
118–202
IPR003343 IPR003343 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080
IPR008964
RBD
118–204
IPR008964 G3DSA:2.60.40.1080 IPR007110 IPR003343
G3DSA:2.60.40.1080
STR
118–206
G3DSA:2.60.40.1080 IPR008964 IPR003343
IPR008964
RBD
290–372
IPR008964
IPR003343
STR
291–370
IPR003343
XPK41836.1
1 1006
Architecture
STR
STR 14-1006
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK41836.1
1 1006
Domain Start End Length (AA) Confidence
N-terminal 1 525 525 0,9395
Central domain 526 724 200 0,3208
C-terminal 725 1006 281 0,5322
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-525
Central
526-724
C-terminal
725-1006

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage KarlSchell_Bas89
[NCBI] 		3398421 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK41836.1 [NCBI]
Genbank nucleotide accession
PQ850613.1 [NCBI]
CDS location
range 14948 -> 17968
strand +
CDS
ATGGCGCTGTATCCAATAAAATCATTAGGGGCTATCGGTGTTATTGCTGATCAGGCACCAACTGATTTAGCACCTAACGCTTTCACCAACGCTATGAATGCTCGGTTTGTTGAGCAGAGAGTTTTTAAGACGGGGGGCAATGCCCCTCTTTCTTACGTGGAAGAAGACAAAGATCTGACCCCACTCTCTTTTGTCTCCATGCCTTTCGATTATTATAGCGCAGGAAATAGCTTCCTTGTAGTAGGTACAGATAAGAAGTTATATAAACTGACAGATGAAAGCTTAACCGATATCAGTCGTAAAGTTGCTACGGTAACTAAGAAAGCTTCTGCTATCATAAAAATTTATCCAGTGGTCTCAAGGATTGTTCCTAAAGAGAGCACTATCACAATGAACTTTAACCAGACAAAAGAGTTAGAAGTTCAGGTTTTTCCAGAGGATGCTAATAATGCCAATCTGACTTGGGAAGTAAGCAACCCCTCTTATGCCAGTATTGCAGTAAATCCTACAGATTCTAAAAAAGCCACCCTCACTACATTGTCTACAGAAGGAACACTATCCATTACTGTTTCTACTGAAGACGAATCTGTGACAGCTCAAATCTCTGTTAACATCGTTGATGGTGATACCGGTATCTTCTTGAGCCAAGACACAATCACAATTCGAAGAGGTGGTACAACAACTCTTACTGCTATCTCAGGTAAGACTCCTATCACTTGGGTTAGTAGCAACGGTGGTGCTTTGTCTGTGACACCTAATGCCAATACACTAACTGCTGTTCTTAATGCTATAGGAGAAGGAACTTTTACTGTTACAGCTGATAACGGTTCTAAGTCTGCTACATGTACGGTTAATGTGATACCTCAGATTGATTCTATTTCTTTGAGTCAGACAGATGTTCAGATGGATAGAGGAACTCAGTATGTTCTGACTGCGACAGTCAACCCTGCTGATGCTCCTAATAAAGCAATCACTTGGACTTCTTCTAATCCGAATATTGCTACAGTATCAGGGACAAGCACAGAAGCTACAATTACTGGACTTCTGGCTGGGTTTACAGAGATTACAGCAGTAACAGAGGAAGGTAGTCGTTCAGCTGTTTGTACTGTTCGTGTCAACCTAGCAGGTAGAATGCTAAATACCAGAAGCCTAGCGATGGCTGCTAGTGCATCTCTAGTAGAAGAGTTCAAAGAGGAAGAAGAACCAGTTGTACAGAATGAAGAAATTGTTTACTTTATGTCTGACTCTATGGGAATTGATACCTCCGGAATGGCTGAAGGCAACAACTTCTTTGACTACTCTAACGTATTCGACATGGAAGGTTTTGCTCGTGCTGCGGAGAACTCAAGAGCTGCTCCTCTGACCAATGTGACACTAGATATTGTTGAAGCTTCTCTAGACGTAGGTGAAGAAATTGTCATAACTGCTACAGCAGCTCCAGAAGGGGATTACTCCTACCAGTGGGTTGTTGATAAAAGTGGTTATGTTTCTACTACCTCTACAACTGGAAGATCTTTGAAACTAACAGCTGTTCGTAAAGGTGAGATTAAAGTTACATGTACGGCGAGTCAGATGACTCAAAGAGACTACGACGCTTTTGATGATTACCCTTGGTATCATGCAGTAATCTCTAACTGTGCAGTAGCGACAACTCACTATGAAACTCCTCAGGTTAAAGAATTCGAATCTGAATACTTTACAGACCTTCCGGGATGGGGTGAACAGACAGTTGTTGATGGTGACGGAAACCCTTCTGTTCGTAAGTTTAACTGGAAGTGCGAAAGAGTTAGAGCTTTTAACAACAGGCTATTTGCTCTGAATATGAGAGAGTCTAACGCCTCTGGTGTTACCACTCATTATCCTTTACGTCTTCGCTGGTCTAACTTTGCGAATGAGAACAAGGCTCCTACTTTGTGGGATGATTATGCTTACGACCGACTGACAACTTCTGATCTTTCAGCGAATATTGTTGGACAGACTGAAGCTCTTGAGAATGGTTATGCAGGATATATTGATCTGGCTGACTCTAACGGAAGTTTGATTGATGTTCTCCCTTTGAAAGATTACTTATTTGTTTACACCGAGTTTGAAACCTACATTGGTTCTCCTACCAATAACACATACCAGCCTCTGATGTTTAAGAAGCTGTTTAACGATTCAGGTATTCTTGCTCCTGAGTGTGTGGTTGAAGTGGAGGGTGGTCACTTTGTTGTAACACAGAACGATGTGATTCTTCATAACGGTGCATCTAAGAAATCTATTGCATCTAATCGTGTCAAGAACATGCTCATTAATGAAGTGTGTTTGGTAAATCCTCTAGCTACTAGAGTTCACTTGCATCAAGATAAGAAAGAAGTTTGGGTCATGTATGTTGGGCCGGGAGAGCCGAAAGAGAGTTTTGCTTGTACAAAGGCTGCGGTCTGGAATTACGAGTTTGACACTTGGTCTTTCCGTACTATCCCTTATGCTCAATGTATTGGTCTTGTTGATCCTCCGGTTCTCGAAAGAGGTCCAGTGTGGACTGACTTCCAAACTATCACTTGGGATGACCCTGCTATCGATAAACTGGTGTGGAGAAAAGATGCAACTAACTTCCGTCAGAGAATTACTATCGTAGGCTCTTTCTTAAGAGGTTTCTATCAAGTAGATGTTGGTGCTTTGGATTATTTCTACGATAGAGCTAATGACAGAGTAATAGAACGTCCTCTGGAAATGAGGTTAGAGAGAACGGGGATTGATTTTGATAACGTCACTAACGAATGGAATCAAAAACATATCAACCGATTCAGACCTCAGACTACAGGTTCTGGTACGTATATCTTTGAAGCTGGAGGTAGTCAATTCTCTAATGAGTATGGTCACAACCACACAACTAAGAGTTATACGATTGGAGTTGATAGGCACGTAGCTGTGAGACTGAACCATCCATACCTATTCTATAATGTTATAGATAATGATGTTAACAGTAACGCAGCCATAAATGGGCTGACAATAGAGTTTAATGTTGGCGGTCGAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
415ce4b14eee1186d64d9478583e8e3eca082a54713b26790e7fe33b18bbcf8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7649
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank