Protein

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Genbank accession
YP_009835312.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,61
Protein sequence
MSNISIPENDNPIRTQASLGGNQKYRNMGNVSGQAYLVRGQVTHVYYQKGTLDFNPYGSSSSSETTDGSGSAPIPVDFWGTNTDGKVFGCYRPVKIGSQVLVAYINGDTSYPIVVGIYPDNEKGYELISPVPYNLGDDSTDSVQGDSLGEKKLYANQQLRYMSGKGDILKSMGGKSFLYISKNDSGYLDDINYAYDQISDFYDRDGNQINPTQTKAQSWLLVHEDNDSDENSDGHRTRFYLNKAGELMVAFMNKNDASNITLLEASKDTGFKLTRRFDTSDLTEESNTYVQLGIGNGNKVNITSVDSGDATTFDLENGSINLNTPEKGTISFNNVSVDTILGKVSDAQNTANNAADKADNAYLAGETAKSAASDAASQALAASQAGEEAKSAAVDAKAAGEDAKAEAKDTQNRIIYYSSISQEKDVAIPGKYIIVNTDTYIKSATIQTAHIADAAITTAKIANAAIGTAQIEDAAITTAKIGNAAIGTAQIEDAAITDAKVGDLSANHLKAGTIDFSVINGTNINASNITVGKLVANQLEIKSLDELSNNLGTVDNGTLGNLNNWGSVKIYADVYAHTFSNLNGTFTADANGGVVASNLTIRGVTNLVYNAALLGNSGTYPNTKVPGWNLFTTGYYSNATLHDGVPSIGFNSSTGGAVWTTFAQSKLYPLNGLTGQPYSASVWFIEDGSDPNMLYQFTLAFFDTNGNRINGYVGQTWSGISSAQPWRYITINKAVSPSNAAYVGLQYWAYNGTGHALFSSPMLTQTAQSTGYQPDTGNIISAGTITGSSFYGGSVINNSNNTAGYYPMSIDSLGTYNSTYIDSAVALRASVQSGAILYNYRSMIANSGQYVYSDTVINGQGLTVDSGYTTVKDTTFSASSTETAYVSISTTGGLFLHGSDANIDFGGHLSDNETNVGMYMNPYGNIIGKSSSDYWQVSKQGADNTGGGATARFGIDTGGKGTINFYRPLFVDEIGAFTSSNGGALLVHDQKGTSQMVFRNDGNPQVVSASIYNRTYSSGSTVTVTSYGTLGRITSASKYKLDIVKDTSIDKANKLLTLDMSSWVDKSSAESLAESKTNGSELSEPEMNVFRHYGLIAEDLIKAGLDEFVIKGDKGQAEGIEYDRLWTVLIPKIRQLSNEQIQNTMTISKLENEIKLLKQEGN
Physico‐chemical
properties
protein length:1162 AA
molecular weight: 124078,00280 Da
isoelectric point:4,76535
aromaticity:0,09122
hydropathy:-0,34225

Domains

Domains [InterPro]
DC_0015
STR
1–1156
DC_0015
IPR030392
CHP
1035–1154
IPR030392
YP_009835312.1
1 1162
Architecture
STR
STR 1-1156 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009835312.1
1 1162
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9528
Central domain 148 996 850 0,4973
C-terminal 997 1162 165 0,9710
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-996
C-terminal
997-1162

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LpeD
[NCBI] 		2041210 Uroviricota > Caudoviricetes > Herelleviridae > Elpedvirus LpeD >
Host Lactobacillus
[NCBI] 		1578 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009835312.1 [NCBI]
Genbank nucleotide accession
NC_048677.1 [NCBI]
CDS location
range 24623 -> 28111
strand +
CDS
TTGAGTAATATAAGTATTCCTGAAAATGATAATCCCATAAGAACTCAAGCTTCTCTTGGAGGAAATCAAAAATATAGAAATATGGGTAACGTTTCTGGACAAGCCTATTTAGTAAGGGGACAGGTAACCCATGTATACTATCAAAAAGGAACTTTAGACTTTAATCCTTATGGTTCTAGTTCATCCTCAGAAACCACTGATGGTAGTGGGAGTGCGCCAATCCCTGTTGACTTTTGGGGAACAAACACTGATGGAAAAGTGTTTGGGTGCTATCGTCCAGTTAAAATAGGTTCCCAAGTTTTAGTTGCCTATATAAATGGTGACACCTCCTACCCTATTGTAGTTGGTATTTATCCAGATAATGAAAAAGGCTATGAACTAATATCTCCTGTGCCTTATAACCTTGGTGATGATTCTACTGATAGCGTTCAAGGGGATTCTTTAGGTGAAAAGAAACTTTATGCTAATCAACAACTAAGGTATATGTCTGGAAAAGGCGACATTTTAAAAAGTATGGGTGGAAAGTCATTTTTATATATTTCTAAAAATGATAGTGGTTATCTCGATGATATTAATTATGCTTATGACCAAATATCGGATTTCTATGATAGAGATGGGAACCAAATAAACCCAACTCAAACAAAAGCTCAATCATGGTTATTAGTTCATGAAGACAATGATAGTGATGAAAACTCGGATGGTCACCGTACGAGATTTTATCTAAATAAAGCCGGGGAATTAATGGTCGCTTTTATGAATAAAAACGATGCAAGCAATATTACTTTATTAGAGGCTAGTAAAGATACCGGATTTAAGTTAACTAGAAGATTTGACACAAGCGATTTAACAGAAGAGTCTAATACCTATGTTCAACTAGGAATTGGCAACGGTAATAAGGTAAATATTACCAGTGTAGATAGCGGAGACGCTACTACTTTTGATTTAGAAAATGGTTCTATTAATTTAAATACCCCTGAAAAGGGAACTATCAGCTTTAATAATGTATCTGTTGATACCATACTTGGAAAGGTATCAGATGCACAAAATACAGCCAATAACGCCGCTGATAAAGCCGATAATGCTTATTTAGCTGGTGAAACAGCAAAATCTGCCGCTAGTGACGCCGCTAGTCAAGCTTTGGCCGCTAGTCAAGCAGGTGAAGAAGCCAAGTCAGCGGCAGTTGATGCTAAAGCCGCTGGTGAAGATGCTAAAGCAGAAGCCAAAGATACCCAAAATAGGATTATATACTACTCTTCAATCTCACAAGAAAAAGATGTCGCTATACCCGGTAAATATATTATTGTCAACACAGATACCTATATCAAAAGTGCTACAATTCAAACAGCCCATATTGCAGACGCCGCTATTACAACGGCTAAGATAGCAAACGCCGCTATTGGTACAGCCCAAATTGAAGATGCCGCTATTACCACAGCCAAAATAGGCAATGCCGCTATTGGTACAGCCCAAATTGAAGATGCCGCTATTACCGATGCAAAAGTCGGAGACCTTAGTGCAAACCATCTTAAAGCCGGAACTATTGATTTTAGTGTTATTAATGGTACCAACATTAACGCTTCTAATATTACCGTTGGTAAACTTGTTGCTAACCAATTGGAAATAAAGAGTCTTGATGAACTATCAAATAACTTAGGAACTGTTGATAATGGTACACTTGGAAACTTAAACAACTGGGGCTCAGTTAAAATATATGCTGATGTTTATGCACACACATTTAGCAACTTAAATGGTACTTTTACCGCTGACGCTAACGGTGGAGTTGTAGCAAGCAACCTAACAATCAGGGGAGTCACAAACCTAGTTTATAATGCGGCATTATTAGGTAATTCTGGCACATATCCAAATACAAAAGTTCCCGGTTGGAATTTATTCACTACAGGATACTATTCAAACGCTACTTTGCATGACGGTGTTCCTTCAATTGGATTTAACTCTTCGACTGGTGGCGCAGTGTGGACTACTTTTGCACAGTCTAAACTATACCCATTAAATGGGTTAACAGGACAACCCTATAGTGCATCAGTTTGGTTTATTGAAGATGGTAGCGACCCTAATATGTTATACCAGTTTACTCTAGCATTTTTTGACACAAATGGTAATAGAATTAATGGATATGTTGGTCAAACATGGTCCGGTATTAGTTCAGCTCAGCCATGGAGATACATTACAATAAACAAAGCAGTATCCCCAAGTAATGCTGCTTATGTTGGACTACAGTATTGGGCCTACAACGGTACTGGTCACGCATTGTTTAGTTCACCTATGCTAACTCAAACTGCTCAATCAACTGGTTACCAGCCTGACACAGGTAATATTATCAGTGCTGGTACTATTACAGGCTCAAGCTTCTATGGTGGTTCAGTAATTAATAATTCAAACAATACTGCTGGCTATTATCCAATGAGCATTGATTCTTTAGGAACCTATAATTCAACCTATATTGACAGTGCGGTAGCATTAAGAGCATCAGTACAATCTGGCGCTATTCTTTATAATTATCGTTCTATGATTGCAAATAGCGGACAATATGTTTACTCTGATACTGTAATTAATGGTCAAGGACTAACGGTTGACTCTGGATACACAACTGTTAAGGATACCACATTTAGTGCTTCAAGTACGGAAACAGCATATGTAAGTATATCAACTACTGGTGGACTTTTCTTACACGGCTCTGATGCCAATATTGACTTTGGGGGGCATCTATCAGACAATGAGACAAACGTTGGTATGTATATGAATCCTTATGGTAATATCATTGGAAAGAGCTCATCTGACTACTGGCAAGTATCTAAACAAGGTGCAGATAATACTGGTGGAGGCGCTACAGCCCGCTTTGGTATTGACACAGGAGGTAAAGGAACAATTAACTTTTATCGCCCATTATTTGTTGATGAAATAGGTGCATTTACCTCTAGTAATGGCGGGGCTCTCCTAGTTCATGACCAGAAGGGTACTAGTCAAATGGTTTTTAGAAATGATGGTAATCCACAGGTTGTATCTGCTTCTATTTATAATAGAACATATTCTAGTGGTTCAACTGTAACTGTAACTAGCTATGGTACTCTAGGACGTATTACGTCTGCAAGTAAGTACAAACTAGATATTGTAAAGGATACTAGTATTGACAAAGCCAATAAATTACTAACACTAGATATGTCTAGCTGGGTAGATAAATCATCCGCTGAAAGTCTAGCTGAGTCTAAGACTAATGGAAGTGAGCTATCCGAACCCGAAATGAATGTATTTAGGCATTATGGTTTAATTGCCGAAGACCTTATAAAGGCCGGCCTAGATGAGTTTGTAATTAAAGGTGATAAAGGACAAGCTGAAGGTATTGAATATGATAGACTATGGACTGTGTTAATTCCTAAAATACGGCAGTTGTCTAATGAGCAAATTCAAAACACTATGACCATATCAAAGTTAGAAAATGAAATTAAACTATTAAAGCAGGAAGGTAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
74bf1dea26a23f957a8fdb0e825015961a55a7d477414262a807d5f4364e480f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5476
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of phages of Lactobacillus pentosus and plantarum Qi,R., Yu,M., Qiao,X. and Li,Y. 2012-01-19 — GenBank