Protein

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Genbank accession
YP_010746529.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVMSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNPVTGQTQKTLPAVLRGAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLATGGISDSAWDAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSILIDRDYNFSNNETVNFGGKTLTIDCKAKFIGDGSLVFTQLGRGSVIVGAYMESVTTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVLYPVWDGFDLGADTDMNPEADRPGDYPVSQYPVHMLPLNHLIDNLLVRGCLGVGFGMDGQGLYVSNITVEDCAGSGAYLLTHETVFTNIAVIDTNTKDFPANQIYISGACRVNGLRLIGIRSTAGQGLTIDAPNSTVSGITGFVDPSRINVANLMEEGLGNTRINSFNNDSAALRLRIHKLTKTLDSGSVYSHINGGPGSGSAWTEITAISGSLPDAVSLKINRGDYRAVEIPVAMTVLPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72843,70810 Da
isoelectric point:5,06176
aromaticity:0,08626
hydropathy:-0,16067

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
G3DSA:2.10.10.80
ATT
65–130
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
71–131
IPR040775 IPR012332
IPR015331
RBD
138–684
IPR015331
YP_010746529.1
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010746529.1
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9940
Central domain 155 628 475 0,9770
C-terminal 629 684 55 0,9258
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-628
C-terminal
629-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella virus VSe103
[NCBI] 		2301720 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus VSe103
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010746529.1 [NCBI]
Genbank nucleotide accession
NC_073182.1 [NCBI]
CDS location
range 23709 -> 25763
strand +
CDS
ATGTCCAGCGGTTGCGGTGATGTAATGTCACTTAATGATTTACAGATAGCCAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGTAAACAAGGCGGTGTAGCCGGCGGTGCAGATATCGACTACGCCACTAACCCGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGGTGCTGGTTTCTCCCCGGCATCTTTTAATTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCAGATAAAGCTGTTCTTTGGCCGAAAGAAGATGGTGGAGACGGTAACTACTACGCATGGCGTGGCTCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTGCGACAGGCGGCATTTCGGATTCCGCTTGGGACGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAACTGGCGGATGCTGCCGTCGACAGTATTCTTATCGACCGTGACTACAATTTCAGCAATAACGAAACCGTTAATTTTGGCGGTAAGACCCTAACCATCGACTGTAAAGCGAAATTTATTGGCGACGGTAGCCTTGTTTTTACACAACTTGGTAGAGGGTCTGTTATAGTTGGTGCTTATATGGAGAGTGTCACAACGCCGTGGGTGATTAAACCGTGGACTGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTCCCTGGCATAGAATCCCTTCTGCCCCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTCGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGTGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGTAAGGATGGGGTAATTACCTTCGAAAACTTGAGCGGGGATTGGGGTAAAGGAAACTATGTCATTGGCGGGCGTACAAGTTACGGTTCGGTAAGTAGCGCCCAGTTTTTACGTAATAATGGTGGCTTTGAACGTGATGGTGGGGTTATTGGGTTTACCTCATACCGTGCCGGCGAGAGCGGAGTTAAGACATGGCAGGGGACTGTAGGTTCCACAACGTCACGAAATTATAATCTTCAATTCCGCGATTCCGTAGTTTTGTACCCGGTATGGGACGGATTCGATTTAGGCGCAGATACCGACATGAACCCGGAAGCAGATAGGCCGGGGGATTACCCTGTATCTCAGTACCCAGTACATATGCTCCCGTTAAACCATTTGATTGATAACTTGTTGGTTAGAGGGTGTTTAGGAGTTGGCTTCGGCATGGATGGGCAAGGGCTATACGTTTCTAACATAACCGTAGAAGATTGCGCTGGCAGTGGAGCATATCTGTTGACGCATGAAACAGTATTCACAAACATTGCGGTAATAGACACGAATACTAAAGACTTTCCTGCTAATCAGATTTACATTTCAGGGGCTTGCCGTGTTAATGGGCTGCGCTTGATAGGCATCCGGTCTACCGCAGGCCAAGGGTTAACAATAGACGCGCCAAACAGTACAGTTAGCGGAATAACTGGATTCGTCGACCCATCAAGAATTAACGTGGCCAATCTAATGGAAGAAGGTCTGGGAAACACACGTATAAATAGTTTCAATAATGATAGCGCGGCCCTGCGACTCAGAATACATAAGCTAACGAAAACTTTGGATAGTGGGTCAGTGTACTCCCACATTAACGGTGGCCCCGGTTCTGGTTCAGCATGGACTGAAATTACAGCTATTTCTGGGTCGTTGCCGGATGCGGTGTCCCTAAAAATTAACCGTGGCGATTATCGTGCTGTTGAGATACCGGTAGCGATGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAGCCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f40ddcd09d62342a6cadfb7090c04f8bb83651607118cad03d5b2fc12d518e45
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Salmonella Enteritidis bacteriophage VSe103 Volozhantsev,N., Kislichkina,A., Denisenko,E., Verevkin,V., Myakinina,V. and Krasilnikova,V. 2017-09-14 — GenBank