Protein

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Genbank accession
QPB11982.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,58
Protein sequence
MAKNEFLPFGIAEGANVLSNQEYERLAARFNGFISGVAKSKELNTVWRQSSVISSALAQFIVDSDNKDLLDNGDVTSVKNRLVAAIKQTISGVGYVTTAAMNLELNKKFDKANISGQKGNDNDKVPSLNLFTTEIGKLQPSGSYIKLGEFGIGTKSSTQLTKLAKDWHTNGFWIGELENGVTMAMGMSVNHINGAYGFNFYARNSKIYYTCTENGVKSKELQVWTESNFNPADYALLSDMNTELAKKQPVGNYIKLGEFGIGTGSSSSLTQYAKDWNKNGFFNGAVNNSSSVVFGISCNHQNGLYGFNIYGRNKRVLFSTRENGVDSVIDGVFYTSENTTVDRNGYLRSSDSTVEMQGIPIGGSIIWNSTAPIPDNFWPNEGRAFSAAEYPELAKIFPTLKLPDDRGYAIRIADNGKGIDAGRTVGTYQDCAIENIVGEIHANIPGSASGVFSYRANGSRAEGGAPTGGAWKFDASTVVRTANETRMKNVAKILITRVK
Physico‐chemical
properties
protein length:499 AA
molecular weight: 54193,00440 Da
isoelectric point:8,45356
aromaticity:0,10020
hydropathy:-0,33948

Domains

Domains [InterPro]
DC_1450
STR
1–317
DC_1450 IPR037053
SSF88874
STR
359–498
SSF88874
DC_1811
STR
395–499
DC_1811
QPB11982.1
1 499
Architecture
STR
ATT
STR
STR 1-317 | ATT 358-413 | STR 414-499
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB11982.1
1 499
Domain Start End Length (AA) Confidence
N-terminal 1 171 171 0,9839
Central domain 172 370 200 0,0650
C-terminal 371 499 128 0,9743
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-171
Central
172-370
C-terminal
371-499

Taxonomy

  Name Taxonomy ID Lineage
Phage Providencia phage PSTCR3
[NCBI] 		2783545 No lineage information
Host Providencia stuartii
[NCBI] 		588 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB11982.1 [NCBI]
Genbank nucleotide accession
MW057855.1 [NCBI]
CDS location
range 12806 -> 14305
strand +
CDS
ATGGCTAAGAATGAATTTCTGCCTTTCGGTATAGCCGAAGGGGCAAACGTGCTTTCAAATCAGGAGTACGAACGGCTTGCTGCTCGTTTCAATGGCTTTATTAGCGGCGTGGCCAAATCGAAAGAGCTTAATACGGTTTGGCGTCAGTCATCGGTTATATCTAGTGCATTAGCTCAATTTATTGTTGATTCAGACAATAAAGATTTGCTTGATAACGGTGATGTTACAAGTGTTAAAAATCGTTTAGTTGCGGCGATCAAGCAAACCATTTCAGGTGTAGGGTATGTTACTACTGCTGCAATGAATTTAGAGCTTAATAAAAAATTCGACAAAGCAAATATTTCAGGCCAGAAAGGCAACGATAACGACAAAGTCCCTAGTCTGAACTTATTCACCACGGAAATAGGAAAACTACAGCCATCAGGGAGTTACATCAAATTAGGTGAGTTCGGCATTGGTACTAAATCCAGTACACAATTAACCAAGCTTGCAAAAGATTGGCATACCAACGGGTTTTGGATTGGTGAGTTAGAAAATGGCGTCACCATGGCAATGGGAATGTCCGTTAACCATATTAATGGGGCTTACGGTTTTAATTTCTACGCGAGAAACTCAAAAATCTATTACACCTGCACAGAAAACGGCGTGAAAAGTAAAGAGCTACAGGTTTGGACTGAGAGTAATTTTAATCCAGCAGACTATGCATTGTTGAGTGATATGAATACAGAGCTAGCGAAAAAGCAGCCTGTAGGGAATTACATCAAGCTTGGTGAGTTCGGCATTGGTACGGGGTCAAGTTCTTCATTAACTCAGTACGCAAAAGATTGGAATAAAAATGGCTTTTTTAATGGTGCTGTTAACAATTCATCCTCTGTTGTTTTCGGTATTTCATGTAATCATCAAAATGGATTATATGGGTTTAATATTTACGGCCGTAATAAGCGGGTTCTTTTCTCAACGCGTGAAAATGGAGTTGATTCTGTCATCGATGGCGTTTTTTATACATCAGAAAATACGACCGTAGATAGAAATGGTTATTTACGGTCATCTGATTCAACGGTGGAAATGCAAGGTATTCCGATAGGTGGCTCTATAATTTGGAACTCTACGGCTCCTATCCCAGATAACTTTTGGCCTAATGAAGGTCGTGCTTTTTCAGCCGCTGAATACCCTGAACTTGCAAAAATATTCCCAACTCTAAAACTTCCTGATGATAGAGGTTATGCGATCCGTATTGCAGACAATGGTAAAGGCATTGATGCGGGTCGTACTGTTGGCACTTATCAAGATTGTGCGATTGAAAATATTGTCGGCGAAATTCATGCAAATATTCCCGGTAGCGCATCTGGCGTTTTTTCTTATAGAGCAAACGGTTCAAGGGCAGAAGGGGGCGCTCCAACTGGTGGTGCATGGAAATTTGACGCTTCAACAGTTGTTCGTACCGCCAATGAAACTCGCATGAAAAACGTGGCTAAAATTCTAATTACGAGAGTGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
24915a859c95ad794e5c14e91e9fbf1a20628602940033e47d2f118f20caf875
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7708
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages targeting Providencia spp. as potential agents for phage therapy Rakov,C., Alkalay-Oren,S., Coppenhagen-Glazer,S. and Hazan,R. 2021-04-02 — GenBank