Protein

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Genbank accession
XVB83298.1 [GenBank]
Protein name
distal tail protein Dit
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIVHNDYLSEGGTKNHDKITNELVKFVNYDEPVTFRFSNQNWFWKVHIDGPFEIPLNTEGQITKFNLKLTILDPRRYSVNELFNTAVSDQIGVVNNGTADTPVIIEARALKDATSFMVAKGKDGVAKDYFMIGKSEDANKVNKDEEPFLFNDEFHTGIGNWAYVGANTTFGNLLDGGDANGGRFGVSELKDSIYPNNYGTTVSTNWHGAAIYKSLGKSLGDFRVKFKVLVRHHADTGPGKGFTYIVDENNRTLFSIGYVNTSTSRNFGQIIAYAYNEHGEAQRIYTRETPFKYLKIANMHVFMTLERKGNEIYIETCKYDYGKDKGRRKPLDKDSKIFKDSGNFYQRKARIAQIYVGKSAKYEKRMYVNLLGFSVQELLPKQSDVTPIVIRKGDFIVVDTGQNIVTLNDENALEMKDFGSNYFMLDSGMSELVIEPEGTFDTKAIWRDSYY
Physico‐chemical
properties
protein length:451 AA
molecular weight: 51210,02490 Da
isoelectric point:6,53480
aromaticity:0,12639
hydropathy:-0,49534

Domains

Domains [InterPro]
DC_0259
STR
1–414
DC_0259
G3DSA:2.60.120.860
RBD
379–439
G3DSA:2.60.120.860
IPR054738
RBD
391–450
IPR054738
XVB83298.1
1 451
Architecture
STR
RBD
STR 1-414 | RBD 415-450 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XVB83298.1
1 451
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,8381
Central domain 141 339 200 0,1783
C-terminal 340 451 111 0,6126
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-451

Taxonomy

  Name Taxonomy ID Lineage
Phage Mammaliicoccus phage phi6229
[NCBI] 		3414231 Viruses >
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XVB83298.1 [NCBI]
Genbank nucleotide accession
PV389082 [NCBI]
CDS location
range 33670 -> 35025
strand +
CDS
ATGATAGTTCATAACGATTACCTATCAGAAGGGGGTACAAAAAATCATGATAAAATTACTAATGAGTTAGTAAAGTTTGTGAATTATGATGAACCTGTTACTTTTAGATTTAGTAATCAAAATTGGTTTTGGAAAGTACACATAGATGGTCCTTTCGAAATACCTTTAAATACTGAAGGTCAAATAACAAAATTTAATTTGAAATTAACAATATTAGACCCTCGTAGGTATTCAGTAAATGAACTATTTAATACTGCTGTTTCTGACCAAATAGGTGTTGTTAACAATGGAACTGCAGATACACCTGTCATCATTGAAGCAAGAGCCCTGAAAGATGCAACGAGTTTCATGGTTGCTAAAGGTAAAGATGGTGTAGCTAAAGACTATTTTATGATTGGTAAATCAGAAGATGCTAACAAAGTTAATAAAGATGAAGAACCTTTTTTATTCAATGATGAATTTCACACAGGAATTGGCAACTGGGCGTATGTAGGGGCTAACACAACGTTTGGTAACTTATTAGACGGTGGAGATGCAAATGGGGGTCGATTTGGTGTATCTGAATTAAAGGATAGTATCTATCCTAATAATTACGGTACTACTGTATCAACCAATTGGCATGGTGCAGCAATTTATAAATCATTAGGTAAAAGTTTAGGTGATTTTAGAGTGAAGTTCAAAGTACTTGTGAGACATCATGCAGATACAGGTCCTGGTAAAGGTTTTACCTATATAGTTGATGAGAATAATAGAACGTTATTCAGTATCGGTTATGTCAATACATCAACTAGTCGTAACTTCGGTCAAATTATCGCATATGCCTACAATGAACATGGCGAGGCACAACGTATTTATACAAGAGAAACACCATTTAAATATTTGAAAATAGCTAACATGCATGTCTTTATGACATTAGAACGTAAAGGCAATGAGATATACATTGAAACTTGTAAATATGATTATGGTAAAGATAAAGGAAGAAGAAAACCACTTGATAAAGATTCTAAGATTTTTAAAGATAGCGGCAATTTTTATCAGCGTAAAGCAAGGATTGCTCAAATATATGTTGGTAAATCAGCTAAATATGAAAAAAGAATGTATGTAAATTTATTAGGGTTCTCTGTACAAGAGTTGCTGCCGAAGCAATCTGATGTCACACCTATCGTAATAAGGAAAGGTGACTTTATTGTTGTAGATACGGGGCAAAATATTGTGACTTTAAATGATGAGAATGCACTTGAGATGAAAGATTTTGGCTCAAATTACTTCATGTTAGATAGTGGGATGTCGGAATTAGTAATAGAACCTGAAGGTACTTTTGATACAAAAGCGATATGGCGTGATAGTTATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b188a21d169f89b0a7f5527512a4630f9d9d69e0f810e644698bc5297632657e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8628
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of phylogenetically distinct temperate phages from Kenyan Mammaliicoccus sciuri Cherbuin,J.D.R. 2025-12-01 — GenBank