Protein

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Genbank accession
YP_010106989.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MANRRPLVLVDGRRKELPFVDSLPGSVIEAYQGRNHIINGGFDVWQRGLSATAVGYQAADRFVHNVGGNAAATMNRIALLPEDFPAGVFSPSAACRIVINSNGTDTVNNFITLQHRAENLARFSNRLLHYGMWVRVNNPGLKVVFEATADPGPGGNSNGGVSNTIGVKTFTIAQANVWTFCPNPFQFPSVRGFSIVSPELSSLRYNVWMSAGTAHNSRNQNLGFQPANSVFDFAMMQLEYGSAPSAFEVLPYAQHYALCRRYAQVYRPPGGMPFLSCTARFANQVIAPMPISPMRITPAVSTSGTLTTVLAGIGYNASAVVGTGSSPDAIYLALTIANATPGHGGYLYATPNSEFSMTLDAEI
Physico‐chemical
properties
protein length:363 AA
molecular weight: 38962,69340 Da
isoelectric point:8,91155
aromaticity:0,10193
hydropathy:0,00110

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010106989.1
1 363
Domain Start End Length (AA) Confidence
N-terminal 1 250 250 0,1478
Central domain 251 352 103 0,0003
C-terminal 353 363 10 0,9988
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-250
Central
251-352
C-terminal
353-363

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage FoX4
[NCBI] 		2723900 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas campestris pv. campestris
[NCBI] 		340 Bacteria > Proteobacteria > Gammaproteobacteria > Xanthomonadales > Xanthomonadaceae > Xanthomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010106989.1 [NCBI]
Genbank nucleotide accession
NC_055839.1 [NCBI]
CDS location
range 41226 -> 42317
strand +
CDS
ATGGCGAATCGTCGGCCCCTAGTGCTGGTTGATGGCCGGCGCAAAGAACTCCCGTTCGTAGACAGCCTGCCCGGTAGCGTCATTGAGGCCTATCAGGGTAGGAACCACATCATCAACGGCGGCTTCGACGTTTGGCAACGTGGACTCAGTGCGACTGCGGTCGGCTATCAGGCTGCCGATCGGTTTGTACATAACGTAGGTGGCAACGCTGCGGCAACGATGAACCGCATCGCGCTGTTGCCCGAAGACTTCCCTGCCGGCGTTTTCTCGCCGAGTGCCGCGTGCCGCATCGTCATCAATTCGAACGGCACGGACACAGTCAACAACTTCATCACGTTGCAGCATCGCGCGGAGAATCTGGCTCGCTTCAGCAACCGACTGCTCCACTATGGCATGTGGGTGCGCGTCAACAACCCAGGCCTGAAGGTCGTGTTCGAAGCGACGGCCGATCCAGGTCCGGGAGGTAATTCGAACGGAGGTGTGAGCAATACGATCGGCGTCAAGACGTTCACCATTGCGCAAGCCAACGTGTGGACTTTCTGCCCGAATCCTTTTCAATTTCCCAGCGTGCGGGGCTTCAGCATCGTGTCGCCGGAGCTGAGCAGCCTACGTTACAACGTCTGGATGAGCGCAGGCACCGCGCACAACTCGCGCAATCAGAATCTCGGTTTTCAACCGGCCAACAGCGTGTTCGATTTTGCGATGATGCAACTGGAATATGGCTCTGCGCCTTCAGCTTTTGAGGTGTTGCCCTACGCACAGCACTACGCGCTTTGTCGTAGGTATGCCCAGGTCTATCGCCCGCCCGGTGGCATGCCGTTTCTGAGTTGCACAGCTCGATTTGCAAACCAGGTTATTGCGCCAATGCCGATCTCTCCGATGCGAATAACTCCTGCAGTTTCCACCTCAGGCACGCTCACTACGGTACTTGCAGGGATTGGCTACAACGCTAGCGCCGTTGTCGGTACGGGCAGCTCACCTGACGCTATCTACCTGGCCTTGACGATTGCGAATGCCACGCCTGGCCACGGGGGCTATTTGTATGCAACGCCCAATAGTGAGTTCTCTATGACCCTTGATGCGGAGATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
16c887d4060a051ba33be7d58596a8f7e3eaafec7a5359a97a328242568bcab6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8782
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of an integrated pest management strategy to control Xanthomonas campestris pv. campestris by using bacteriophages Holtappels,D., Rombouts,S., Lavigne,R. and Wagemans,J. 2022-01-27 — GenBank