Protein

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UniProt accession
B2ZY46 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MQSVLRDRVNVRNYGVLGVGTDDTLALSTMMATLQSAGQVVDVYFPAGLYLVSGSGIVGNQFIGRIHGDGPTASVIQAASSAMTSPALSFSSTADGITIQDIGILGPGQAAGAGQDGVVIANGSSPVRQPRLVNCEVYNWPGRAFNISTPIAGVAENCRVQNNVHGFYLNGGTSFTFINCYPNGNLKSGYWLNGTTYSAAIGCAADTNGVAWLLSGVTVFSMVGCGNEAGTAYNLTITNSSLTSNVATFTYSGPDQSADFIGNGRTIVIRGSTNIPAANAGISGLGDGRWPIASVGTNTVSIALTGTNITSAADVGTVSFWAGDGIVSNGSTVIQVMGYRTIAPAQTSSSMIVTEGSSNQITLQGMRSTQGSGQAQTTDMWFGSGSSNIIRMNNAFSGQTYQGATNITTVSNGTWTVPTLTATAAINSNGALTLTQLASASSGSNVNSPAVNLLSTYWTGTASAQDTVTIQAKPAASGANPLISLNFQHSSGSSGGMQLSVNGNAVITGGGQFIGGGGISTTGNAVIGGTLSVTGVATGPTPTPGDNSTKLATTAFVQAAIPAAGTIPYDMPMFFPGTMTANQLLARTIFTRNITWPVSLTGTQCSAPSGQGATASTTVTLYQNGTSIGTLTWAAGSTTPTITFSAQVNWVAGDVLTIFAPASPDTTLANVSLTVAAFR
Physico‐chemical
properties
protein length:679 AA
molecular weight: 68677,71520 Da
isoelectric point:5,30861
aromaticity:0,07069
hydropathy:0,15862

Domains

Domains [InterPro]
IPR011050
STR
8–254
IPR011050 DC_1049
IPR012334
STR
8–316
IPR012334
IPR024535
ENZ
9–82
IPR024535
B2ZY46
1 679
Architecture
STR
RBD
STR 8-316 | RBD 541-679
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
B2ZY46
1 679
Domain Start End Length (AA) Confidence
N-terminal 1 44 44 0,6496
Central domain 45 254 211 0,9900
C-terminal 255 679 424 0,5390
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-44
Central
45-254
C-terminal
255-679

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage phiRSL1
[NCBI] 		1980924 Uroviricota > Caudoviricetes > Mieseafarmvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
faa04b20289ab08b92b0c1bb092a1a255b4c032ba847525d5349e2c317a76589
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7393
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50