Protein

View in Explore
Genbank accession
YP_010088742.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSRTVPGSGASIKPIFDENFGVRAIRVVNGGSGYDSTDPPRLTVTGCGTPDTEALLYPIIDDQSGKIIHVRVLERGRGYDPLRLQFFPEQESPTVIDSLDINRIWQTHPNSSTTGTFLSNTDRLRIVSDNHPKPTWIQAEAAPGGGPLIDRSFDQTFIYRGGKDVPNSNTRSEQNNKAIGILANGGLLHTPEWGTTGNAPTNFAIDSVKYDYVKDNSVYDTVTEGNVRYYHTSKSLDEFKLGNGVFEWGKFTQFTWNVKVENGNIALDVSNVDESLGTVAVGRTVDEIGGGATGEISKVVRNNSNVVTRIYLRLVSTAASFSENDRCLGSTGFTFTISEPPITFNAYYIDFGPDAAKFGNFIPGTFYFSPENISVKRNYLIKFNQSDSTNSNHPIRFSTTPDGTHNETPGTLYYTSTGSSSAPAADYESEYMPIFMMNADESSRIYYYCLNHPNMAGQDGDEGFMTLSTDTSAETLTNTYYVEDYFGSGATLDYSRFTDGHSKIIGMSYDGYPIYGPYGYNASGNAVREVSSHRLRSTAELPGTRPAVNSASTTTYAVTVSSGEFLFDGSRPNFLSLGRGKTFIFNQDHASNDGKILFFSETEDGWHPSSSIGTTSFLYDLGVTYTLDGSAVTYAAYIAGFDAATQRRIQIVVPVTAPSTLYVFGYQTSGLGLRTVQSGYLLGDLVQDYIYDSSVGTLDEFNGKFAVTPDYPNGTYAYFMTEDGSGNPVYPYVIGRKFYGTPIFEGGAVPEVVTDFPDGAAGDVVLDDDGKVSYIKMTKNGDNYYGTTKARILGGQGSGATGTSTVQTVTGLTLLNSGRSYSSAPTVVFEGGGGQDAQGLAKIDTTGKVTSVSIADGGEFYQEPPYVLLTGGGGIGAKAVATIDQGQISSITVTDTGEGYTSAPNVIFTRLVNLKRKTRARQANNAKNIYLTGLTKDVTTSDDVIYVKNTSAFPGSGEFILDYETISYTSKTDEKFAGITRGVNFNYDQRVILDDGQNDDAGVSTYNFNVGDRLIRRVESASNKIAKVYDWNPNTRELLLTFEIDELAFIDGGIPSSEEATVQFDAGVASSSGSNVTPHVVIVEEGSTITTLTVPIAILENKNFEDNDEQDGAGDGIPDLVNTGTDFENQLNLDGGIYNSLYGIEETQGGTNTTLLAVGDSVKDASVPFKFANIATAGGLSEGREHVALVNLTLDALDGNGQNFSVNEVITGDISGVRGTVVSWNATTKVLQVKDVVPFNTGNVNVGEGGYLYKFSEKSTVVDVYIQNAGTNYSGTPTLAFENIGDIRATGTVNMTIAGDQVESINITNGGYGYVQSVDNTYDLHPELTFTNAGGDSTGSGVVAYAILGGEKVSGNNGAQYRIKSIEYVSTVRSK
Physico‐chemical
properties
protein length:1375 AA
molecular weight: 147772,68420 Da
isoelectric point:4,59085
aromaticity:0,10400
hydropathy:-0,30633

Domains

Domains [InterPro]
DC_1338
ATT
1–837
DC_1338
IPR008972
STR
361–458
IPR008972 IPR025924 DC_0756
YP_010088742.1
1 1375
Architecture
ATT
RBD
ATT 1-837 | RBD 838-1373 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010088742.1
1 1375
Domain Start End Length (AA) Confidence
N-terminal 1 99 99 0,9845
Central domain 100 413 315 0,6878
C-terminal 414 1375 961 0,0626
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-99
Central
100-413
C-terminal
414-1375

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM22
[NCBI] 		1883365 Uroviricota > Caudoviricetes > Pantevenvirales > Alisovirus > Alisovirus socal22
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010088742.1 [NCBI]
Genbank nucleotide accession
NC_055710 [NCBI]
CDS location
range 70428 -> 74555
strand +
CDS
ATGTCTAGAACTGTTCCTGGATCGGGTGCCTCTATCAAACCAATTTTTGATGAAAATTTTGGTGTCCGTGCAATACGAGTAGTAAATGGTGGATCTGGATATGACTCTACAGATCCACCTAGATTGACAGTAACTGGTTGTGGTACTCCAGATACTGAGGCATTACTATACCCTATAATTGATGATCAATCTGGAAAAATTATTCACGTAAGAGTTCTTGAGAGAGGTCGTGGTTATGACCCTCTACGATTACAATTTTTTCCAGAACAAGAATCTCCAACAGTCATAGATTCACTTGATATTAATAGAATTTGGCAGACGCATCCAAATTCTTCCACTACAGGAACTTTTTTATCAAATACCGATAGACTTAGGATAGTATCTGATAATCACCCCAAACCAACTTGGATTCAAGCAGAAGCAGCACCTGGAGGTGGTCCTTTAATTGACAGATCTTTTGATCAAACATTCATTTACCGTGGCGGTAAAGATGTTCCTAATTCAAATACCAGATCAGAACAAAATAATAAAGCAATTGGTATTCTTGCTAATGGTGGTCTCTTACATACTCCAGAGTGGGGAACTACTGGAAATGCACCAACTAATTTTGCTATAGATTCAGTAAAGTATGATTATGTTAAAGATAACAGTGTATATGATACTGTAACTGAAGGAAATGTAAGGTATTATCACACAAGTAAATCATTAGATGAGTTTAAACTTGGTAATGGTGTTTTCGAGTGGGGAAAATTCACTCAGTTTACTTGGAATGTAAAAGTTGAAAATGGTAATATTGCTTTAGATGTTAGTAATGTAGATGAATCTCTTGGTACGGTTGCTGTTGGTAGAACTGTTGATGAAATTGGTGGTGGTGCAACAGGAGAAATTTCAAAGGTTGTAAGAAATAATTCTAATGTTGTAACACGAATTTATTTACGATTAGTATCTACAGCGGCTTCTTTTTCTGAAAATGATAGATGTTTAGGATCCACTGGATTTACATTTACAATTTCAGAACCACCAATAACATTTAACGCATATTATATTGATTTTGGTCCCGATGCTGCAAAATTTGGTAATTTTATACCAGGAACATTTTATTTTTCTCCAGAAAATATTTCAGTAAAGAGAAATTATCTGATTAAATTTAATCAATCTGATTCTACTAATAGCAATCATCCGATTAGATTTAGTACAACTCCTGATGGTACTCATAACGAAACTCCTGGCACTCTTTACTACACAAGCACTGGATCATCATCAGCACCAGCAGCAGATTACGAAAGTGAATATATGCCCATATTCATGATGAATGCTGATGAAAGTAGTAGGATCTATTACTATTGTTTGAATCATCCAAATATGGCTGGTCAAGATGGTGATGAAGGATTTATGACTCTCAGCACAGATACTAGTGCTGAAACTTTAACTAATACTTACTACGTCGAAGATTATTTTGGTTCTGGTGCAACTTTAGATTATAGTCGTTTTACTGATGGACACTCTAAAATTATTGGTATGTCCTACGATGGATATCCAATTTACGGTCCTTATGGATATAATGCTAGTGGAAATGCTGTTAGAGAAGTTTCCTCGCATCGTTTAAGAAGTACAGCAGAACTTCCTGGTACAAGACCTGCTGTAAATTCTGCAAGTACAACAACTTATGCAGTAACTGTTTCTAGTGGTGAATTTCTTTTTGATGGTTCTAGACCTAATTTCTTGTCTTTAGGTAGAGGAAAGACATTTATCTTTAATCAGGATCATGCGTCAAATGACGGAAAAATTTTATTTTTCTCGGAGACCGAAGATGGGTGGCATCCTTCTAGCAGTATTGGAACCACTTCCTTTCTGTACGATTTGGGAGTTACTTATACACTAGATGGTTCTGCAGTAACTTATGCTGCATATATTGCTGGATTTGATGCGGCAACACAAAGAAGAATTCAAATTGTTGTACCAGTAACAGCACCATCCACTTTGTATGTTTTTGGATATCAAACTAGTGGTCTTGGTTTGAGAACAGTTCAGAGTGGATATCTTCTTGGAGATTTGGTTCAAGATTACATTTATGATTCTAGTGTTGGTACGCTTGACGAATTCAATGGTAAGTTTGCAGTAACTCCAGACTATCCAAATGGAACTTATGCATATTTCATGACAGAAGATGGCAGTGGAAATCCTGTCTATCCATATGTTATTGGACGTAAATTCTATGGCACACCTATTTTTGAGGGTGGTGCTGTTCCTGAAGTTGTTACAGATTTTCCTGATGGTGCTGCTGGAGATGTTGTCTTAGACGACGATGGGAAAGTATCTTACATTAAGATGACTAAAAATGGTGACAATTATTATGGAACTACAAAAGCAAGAATTTTAGGTGGACAAGGATCTGGTGCTACAGGAACATCCACTGTTCAAACAGTTACAGGTTTGACTCTTCTGAATTCTGGTAGAAGTTACTCTAGTGCTCCTACAGTTGTTTTTGAAGGTGGTGGTGGACAAGATGCTCAAGGACTAGCAAAAATTGATACTACTGGAAAGGTCACTTCCGTTTCTATTGCAGATGGAGGAGAATTTTATCAAGAACCGCCTTATGTTCTTTTAACTGGAGGTGGTGGTATTGGAGCAAAAGCAGTTGCTACAATCGATCAGGGTCAAATCTCTAGTATTACTGTAACTGATACTGGTGAGGGATATACATCTGCCCCAAATGTAATATTCACTAGATTGGTAAATCTCAAGCGTAAAACTAGAGCTCGTCAGGCAAATAATGCTAAAAACATTTACTTAACTGGTCTTACTAAAGATGTAACCACATCAGATGATGTAATTTATGTAAAGAATACTAGTGCATTCCCTGGATCAGGTGAATTTATCCTAGATTATGAAACTATTTCATACACTAGTAAAACAGATGAAAAATTTGCTGGTATTACTAGAGGAGTAAACTTTAATTATGACCAGAGAGTTATCCTTGATGATGGTCAAAATGATGATGCTGGAGTTTCCACATATAACTTTAATGTTGGGGATCGATTAATTCGTAGAGTTGAAAGTGCAAGCAATAAAATTGCTAAAGTTTATGATTGGAATCCTAATACTAGAGAACTTTTACTAACATTTGAAATTGATGAACTGGCATTTATTGATGGTGGTATTCCATCTAGTGAAGAAGCTACAGTTCAATTTGATGCTGGTGTTGCTTCAAGTTCTGGTTCCAATGTTACTCCACACGTAGTTATTGTTGAAGAAGGATCTACAATCACAACTTTGACAGTTCCTATTGCAATTTTAGAAAATAAAAATTTTGAAGACAATGATGAACAAGATGGTGCTGGCGACGGTATCCCAGATTTAGTAAATACTGGAACAGACTTTGAAAATCAACTCAACCTTGATGGTGGTATCTATAATTCTCTATATGGTATCGAAGAGACTCAGGGTGGAACTAATACAACATTATTAGCAGTTGGTGACAGTGTTAAAGATGCTAGTGTACCATTCAAATTTGCAAATATTGCTACAGCAGGCGGACTTAGTGAAGGAAGAGAGCACGTCGCTCTTGTCAATTTAACTTTAGATGCTCTTGACGGTAATGGTCAAAACTTCAGTGTTAATGAAGTTATTACTGGAGATATATCTGGAGTTCGTGGAACAGTTGTTTCATGGAATGCAACAACTAAAGTTCTTCAGGTCAAAGATGTTGTTCCCTTTAACACTGGGAATGTCAATGTTGGAGAAGGAGGATATCTTTATAAATTCTCCGAAAAAAGCACAGTTGTTGATGTCTATATTCAAAATGCAGGAACAAACTATTCTGGCACACCTACATTGGCATTTGAAAATATTGGCGATATTAGAGCAACAGGAACTGTTAATATGACAATAGCAGGTGACCAGGTGGAATCTATCAATATCACAAATGGCGGATATGGATATGTTCAATCTGTAGATAATACTTATGATCTTCATCCAGAACTTACATTTACAAATGCTGGCGGAGATAGCACTGGATCTGGTGTTGTAGCATATGCTATTTTGGGTGGAGAAAAGGTTTCTGGAAACAACGGAGCGCAATATAGAATCAAGAGCATTGAATATGTCTCAACTGTCCGTTCCAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a69eef7e380fdb7828023a3a01b1abcacdd313ca1adcecd4bc82c56847308c55
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4456
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50