Protein

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Genbank accession
AWD90619.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIPSVLDGLYKRIGTKHIAQLPLTPDLIYDERTVIHFYDRGDEEKYFIFFEPNRATPHIFTTTGVKGVVSHGTDVLDYCTVENPLQDMSFSTIGDYTFIANGVIPVRARADVQPANPANMAIVYVQFSTYSRTYSIIINGVVAATHTTPGGTYTSPGDANNAEAQLDTTYVCGILAQKLRDLGTYNVSQVANCMFISKGDGPINTITTADGAGGSDLIAVQNRVKNTATLPPYAPNGWLLLIQANEGIKKNNWWLRAEGTDGSRVKWVESVEGGQRLGFNRYTMPHTLVRTSIVAGVPQFSLTQGAWEDRSVGNDTTNPFPSFLDGYVYSVGTFQNRLFFTSGEAAVFTRSNNFFDFWKESSQAELDSDPIDTFSDSEKVNRIKNSVTVDGDAIFFAESGQFMIDGSKPVTAANVVFKQVTSFPMNINAKPAITGESIMFSYNAGNYSGVREMFTDSDKDTKSARPITEHVEKYIEGQVRQLSSNPNTNVLLVRTEKDPHLAYVYDWMWQGADKVQAAWHKWTFDTASKLLHVQFVDDDVFLIFLHADGKVYLEHMPLTNDDDELGMTFPCRMDRKVVVDAVWDATAAVWRLTTPFDILNTDFTNWLAIQSVGCNAGDIGTETVLERGLGLNSFFTRDAIADPAVITTVKLVVGRKFRSRYIPTQPFIRDREGKVQAIDNITLGRANINYASTGQFTVFVTNSYGQQFKYPFYGRYMGSFNNKVGFAPLIDGTFPFPVRLYAHEATIEIQSDSHLPLRVRGLEWEGSYQQTGRRL
Physico‐chemical
properties
protein length:775 AA
molecular weight: 86416,09580 Da
isoelectric point:5,43031
aromaticity:0,11742
hydropathy:-0,24181

Domains

Domains [InterPro]
IPR058003
TTP
2–774
IPR058003
AWD90619.1
1 775
Architecture
TTP
TTP 2-774 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWD90619.1
1 775
Domain Start End Length (AA) Confidence
N-terminal 1 108 108 0,9716
Central domain 109 307 200 0,1776
C-terminal 308 775 467 0,2821
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-108
Central
109-307
C-terminal
308-775

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Njord
[NCBI] 		2163985 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Njordvirus
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWD90619.1 [NCBI]
Genbank nucleotide accession
MH113812 [NCBI]
CDS location
range 26897 -> 29224
strand +
CDS
ATGATCCCGTCCGTCCTCGATGGTCTGTACAAGCGCATCGGCACCAAGCACATCGCCCAGTTGCCGCTGACGCCTGACCTGATCTACGACGAGCGAACGGTGATCCACTTCTACGACCGAGGGGATGAAGAGAAATACTTCATCTTCTTTGAGCCGAACCGGGCCACTCCGCACATCTTCACCACCACTGGCGTCAAGGGTGTGGTTTCCCATGGCACGGATGTTCTGGACTATTGCACCGTGGAGAACCCACTGCAAGACATGAGCTTCAGCACCATCGGTGACTACACCTTCATTGCGAATGGTGTGATCCCTGTCCGTGCGCGGGCGGATGTGCAACCAGCCAACCCAGCCAACATGGCCATCGTCTATGTGCAGTTCTCGACATATAGCCGGACGTACAGCATCATCATCAACGGGGTTGTGGCAGCAACGCACACGACTCCGGGTGGTACTTACACATCACCGGGCGATGCCAACAACGCCGAAGCTCAGCTCGACACCACCTACGTCTGCGGCATCCTTGCCCAGAAGTTGCGTGACCTCGGAACCTACAACGTCAGCCAAGTGGCTAACTGCATGTTCATCTCCAAGGGTGACGGCCCGATCAACACGATCACCACTGCCGATGGCGCTGGCGGCTCAGACTTGATCGCGGTACAGAACCGGGTGAAGAACACGGCCACCCTGCCACCCTATGCACCGAACGGCTGGCTGCTGCTGATCCAAGCCAACGAGGGCATCAAGAAGAACAACTGGTGGCTGCGAGCTGAAGGCACCGATGGCTCCCGCGTCAAGTGGGTGGAGTCTGTTGAGGGCGGGCAGCGTCTGGGCTTCAATCGGTACACCATGCCACACACTCTGGTGCGAACCAGTATCGTGGCGGGCGTGCCTCAGTTCAGCCTGACCCAAGGTGCATGGGAGGATCGGTCGGTCGGCAACGACACCACCAACCCCTTCCCGTCGTTCCTCGATGGCTATGTGTACTCGGTGGGCACCTTCCAGAACCGGCTGTTCTTCACCAGCGGAGAGGCGGCTGTGTTCACACGGTCGAACAACTTCTTCGACTTCTGGAAAGAGTCGAGCCAAGCTGAGCTGGACAGTGACCCCATCGATACCTTCAGCGACAGCGAGAAGGTGAACCGGATTAAGAACTCTGTGACCGTGGATGGCGATGCTATCTTCTTCGCTGAGTCCGGCCAGTTCATGATCGATGGCAGCAAGCCAGTGACCGCAGCCAACGTGGTGTTCAAGCAGGTGACTTCGTTCCCGATGAACATCAACGCGAAGCCAGCCATCACGGGTGAGAGCATCATGTTCTCCTACAACGCCGGGAACTACAGCGGGGTTCGTGAGATGTTCACTGACTCCGACAAGGACACCAAGTCCGCCCGTCCAATCACCGAGCATGTAGAGAAGTACATCGAAGGCCAAGTGCGTCAGCTCAGCTCCAACCCGAACACTAACGTGCTTCTGGTGCGGACAGAGAAAGACCCACACCTCGCCTATGTGTACGACTGGATGTGGCAGGGTGCGGACAAGGTGCAGGCAGCGTGGCACAAGTGGACATTCGACACAGCGAGCAAACTGCTGCACGTTCAGTTCGTGGATGACGATGTGTTCCTGATCTTCCTGCACGCGGATGGCAAGGTGTACCTTGAGCATATGCCGCTGACCAACGATGACGATGAGCTGGGGATGACCTTCCCATGCCGCATGGATCGCAAGGTGGTAGTAGATGCAGTGTGGGACGCGACCGCAGCAGTATGGCGCCTGACCACACCGTTCGACATCCTCAATACCGACTTCACCAACTGGCTGGCTATTCAGTCCGTGGGCTGCAACGCAGGTGACATCGGGACTGAGACAGTGCTTGAGCGTGGGCTGGGGCTTAACAGCTTCTTCACCCGTGATGCCATTGCCGACCCGGCAGTCATCACCACCGTCAAGCTGGTAGTAGGCCGGAAGTTCCGTAGCCGGTACATCCCGACGCAGCCGTTCATTCGTGACCGTGAAGGGAAGGTGCAGGCCATCGACAACATCACGCTGGGCCGTGCGAACATCAACTACGCCAGCACTGGGCAGTTCACCGTGTTCGTCACCAACAGCTACGGGCAGCAGTTCAAGTACCCGTTCTATGGCCGGTACATGGGCAGCTTCAATAACAAGGTGGGCTTTGCTCCGCTGATCGATGGAACCTTCCCGTTCCCCGTTCGGCTCTACGCGCATGAGGCCACCATCGAGATCCAATCAGATAGCCACTTGCCGCTTCGTGTCCGTGGACTGGAGTGGGAGGGAAGCTATCAACAGACAGGCCGGAGGTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d8e855ba259f50e93d32bbeae1bad0540b1b29dcc1d920f10df4ec4aa8b06fd5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9192
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Djurhuus,A.M., Carstens,A.B. and Hansen,L.H. 1991 — GenBank