Protein

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Genbank accession
AAX12083.1 [GenBank]
Protein name
tail protein Pb5
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSFFAGKLNNKSILSLRRGSGGDTNQHINPDSQTIFHSDMSHVIITETHSTGLRLDQGAGDYYWSEMPSRVTQLHNNDPNRVVLTEIEFSDGSRHMLSGMSMGVGAKAYGIINPQIMSQGGLKTQITASADLSLDVGYFNTGTSGTIPQKLRDGTGCQHMFGAFSGRRGFASSAMYLGGAALYKSAWSGSGYVVADAGTLTIPSDYVRHPGARNFGFNAIYVRGRSCNRVLYGMEGPNYTTGGAVQGASSSGALNFTYNPSNPESPKYSVGFARADPTNYAYWESMGDPNDSANGPIGIYSEHLGIYPSKITWYVTNLVYNGSGYNIDGGLFNGNDIKLSPREFIIKGVNVNNTSWKFINFIEKNFNVGNRADFRDVGCNLSKDSPSTGISGIATFGLPTTESNNAPSIKGGNVGGLHANVVSIYNFLPSASWYVSSNPPKIGNNYGDVWSENLLPLRLLGGSGSTILSGNIVFQGNGSVHVGTVGLDLNSSRNGAIVCTMEFIDDTWLSAGGIGCFNPTEMLSQGAEYGDSRFRIGGNTINKKLHQILSLPAGEYVPFFTIKGTVVNACKLQAAAYNPTPYWVSGLPGSVGQTGYYTLTYYMRNDGNNNISIWLDSSMSNIIGMKACLPNIKLIIQRLT
Physico‐chemical
properties
protein length:640 AA
molecular weight: 68725,13840 Da
isoelectric point:8,01937
aromaticity:0,10469
hydropathy:-0,22297

Domains

Domains [InterPro]
IPR059609
RBD
1–640
IPR059609
AAX12083.1
1 640
Architecture
RBD
RBD 1-640
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAX12083.1
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 158 158 0,0857
Central domain 159 357 200 0,3630
C-terminal 358 640 282 0,9417
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-158
Central
159-357
C-terminal
358-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage T5
[NCBI] 		2695836 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus T5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAX12083.1 [NCBI]
Genbank nucleotide accession
AY587007 [NCBI]
CDS location
range 108509 -> 110431
strand -
CDS
ATGAGTTTTTTCGCTGGCAAGCTAAATAACAAATCTATACTCTCACTGCGAAGGGGTAGTGGTGGAGATACTAACCAACATATCAACCCTGATTCCCAAACCATCTTTCATTCAGATATGTCGCACGTAATTATAACGGAAACTCATTCTACTGGATTAAGATTGGATCAGGGGGCTGGTGACTATTACTGGTCTGAAATGCCTAGTAGAGTTACACAGCTACATAATAATGACCCTAATAGAGTTGTATTAACAGAGATTGAGTTTTCTGATGGCTCTAGACATATGCTATCTGGCATGTCTATGGGAGTAGGTGCAAAAGCCTATGGTATTATAAATCCTCAGATTATGTCTCAGGGTGGATTAAAAACACAAATAACAGCTAGTGCCGATCTTTCACTTGATGTAGGTTATTTTAATACGGGTACTAGTGGCACTATACCACAAAAGTTAAGAGATGGCACAGGATGTCAACATATGTTCGGTGCTTTTAGTGGGAGAAGGGGGTTTGCATCAAGTGCAATGTACTTAGGTGGTGCTGCTCTTTACAAATCTGCGTGGAGTGGTTCCGGTTATGTGGTGGCTGATGCAGGAACCTTAACTATCCCTAGTGATTATGTTAGACACCCAGGAGCTAGGAACTTTGGTTTTAATGCTATATACGTTCGTGGTAGGTCTTGTAATAGGGTTCTTTATGGTATGGAAGGACCAAACTATACTACCGGTGGGGCTGTGCAGGGAGCTTCGAGCTCTGGAGCCCTTAACTTTACGTATAACCCCAGTAATCCAGAATCACCAAAGTATTCCGTAGGTTTCGCACGTGCTGATCCTACTAACTATGCTTACTGGGAAAGTATGGGAGATCCTAATGATTCTGCCAATGGACCTATAGGTATCTACAGCGAACATTTAGGCATTTATCCATCTAAAATTACATGGTATGTTACTAACCTAGTATACAATGGTTCTGGGTATAATATAGACGGTGGGTTATTTAACGGTAATGACATTAAGCTCAGCCCAAGAGAATTTATTATTAAAGGGGTTAATGTTAATAATACATCTTGGAAATTTATTAATTTTATAGAGAAAAATTTCAACGTTGGTAACAGAGCTGATTTTCGTGATGTTGGTTGTAATCTAAGTAAAGATTCTCCCTCAACAGGAATATCAGGTATAGCAACATTTGGGCTACCAACCACAGAGAGCAATAATGCTCCTAGTATTAAAGGTGGTAATGTTGGTGGCTTACATGCTAATGTTGTTAGTATTTATAATTTTTTACCTTCAGCATCTTGGTATGTATCTAGTAATCCACCAAAAATAGGTAATAACTATGGCGACGTTTGGAGTGAGAATTTATTACCATTAAGACTCCTGGGAGGTAGTGGTAGCACTATATTATCTGGAAACATAGTATTCCAGGGTAATGGATCTGTACATGTTGGTACTGTGGGGTTAGATCTTAATAGCAGTAGAAATGGTGCTATTGTATGTACTATGGAGTTTATAGATGATACATGGCTATCCGCAGGCGGTATTGGTTGCTTCAATCCTACAGAAATGTTATCCCAAGGGGCAGAATACGGTGATAGTAGATTTAGGATAGGGGGGAATACCATAAATAAAAAACTGCATCAAATACTATCTCTACCAGCCGGAGAATACGTTCCATTCTTTACTATAAAAGGTACAGTTGTAAACGCTTGTAAATTGCAGGCTGCTGCGTATAATCCAACACCATATTGGGTATCTGGGTTGCCTGGATCTGTTGGGCAAACAGGATACTATACTCTAACTTACTATATGAGAAATGATGGAAATAATAATATCTCTATTTGGTTAGATTCTTCCATGAGTAATATAATTGGCATGAAAGCATGCTTACCTAATATTAAACTTATAATTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

1 / 3
PDB ID
Source
Method
Resolution
Oligomeric State